Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005537.1-P | |
| Bra022916.1-P | |
| Bra023148.1-P | |
| Bra039871.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19980.1 | Bra023148.1-P | AT1G30860.1 | 21798944 |
| AT1G19980.1 | Bra039871.1-P | AT1G30860.1 | 21798944 |
| AT1G19980.1 | Bra005537.1-P | AT2G32980.1 | 21798944 |
| AT1G19980.1 | Bra022916.1-P | AT2G32980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62942 | Canola | nucleus | 95.45 | 95.45 |
| Bra012201.1-P | Field mustard | nucleus | 70.0 | 69.37 |
| AT1G19980.1 | Thale cress | nucleus | 66.06 | 63.74 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 43.33 | 37.73 |
| KRH11849 | Soybean | nucleus | 38.79 | 33.42 |
| KRH36857 | Soybean | nucleus | 38.48 | 33.16 |
| PGSC0003DMT400025536 | Potato | nucleus | 35.76 | 32.87 |
| Solyc04g081450.2.1 | Tomato | nucleus | 34.85 | 32.03 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 30.0 | 23.86 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 26.06 | 22.4 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 25.76 | 22.19 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 24.55 | 21.26 |
| Os04t0117200-01 | Rice | cytosol | 26.36 | 21.01 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 24.24 | 18.43 |
| Zm00001d039489_P002 | Maize | nucleus | 20.3 | 18.01 |
| EES02317 | Sorghum | cytosol | 20.61 | 16.96 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 8.48 | 15.05 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 8.48 | 14.66 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 13.94 | 12.3 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 16.36 | 10.06 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 16.97 | 9.79 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 15.76 | 8.78 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 11.82 | 8.76 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 15.15 | 8.65 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 17.27 | 8.19 |
Protein Annotations
Description
AT1G19980 (E=1e-110) | cytomatrix protein-related
Coordinates
chrA08:-:18665579..18666885
Molecular Weight (calculated)
37997.1 Da
IEP (calculated)
9.670
GRAVY (calculated)
-0.953
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKSSGDST DRKSWDKLFK TLVKILQTKQ DEVESLLKDR KVLEDKLKSQ HENWISDARN HEEQLSLMNR EVETMEMMQF FETAKCNLLS GFKERDHSLC
101: NLKLEQTVDE RDDFKAWFDF LTLNTNKESG SSSLEAEMRK LKLEYEKLAS EKKREVSDLS RENGFVWSQL KCIESGFTDK LKKREDEISQ ANSKIASLLS
201: FQEQLQSSNQ EKDEVISSLK AKVAEMEMDS RKRDEEISKL SRERESLKKS RSFTPVLTRC TTRDKGNNSN TVSTKKEKLA ASTPNQEEIK SAKRKRENKT
301: TPATVSVIPK LFTSTFRLPK LKSPPSGVIG
101: NLKLEQTVDE RDDFKAWFDF LTLNTNKESG SSSLEAEMRK LKLEYEKLAS EKKREVSDLS RENGFVWSQL KCIESGFTDK LKKREDEISQ ANSKIASLLS
201: FQEQLQSSNQ EKDEVISSLK AKVAEMEMDS RKRDEEISKL SRERESLKKS RSFTPVLTRC TTRDKGNNSN TVSTKKEKLA ASTPNQEEIK SAKRKRENKT
301: TPATVSVIPK LFTSTFRLPK LKSPPSGVIG
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.