Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19980.1 | KRH12155 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | KRH37161 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | KRG91378 | AT2G32980.1 | 21798944 |
| AT1G19980.1 | KRH35436 | AT2G32980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11849 | Soybean | nucleus | 83.03 | 83.03 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 42.04 | 42.48 |
| AT1G19980.1 | Thale cress | nucleus | 34.46 | 38.6 |
| Bra016482.1-P | Field mustard | nucleus | 33.16 | 38.48 |
| Bra012201.1-P | Field mustard | nucleus | 32.38 | 37.24 |
| PGSC0003DMT400025536 | Potato | nucleus | 34.46 | 36.77 |
| CDY62942 | Canola | nucleus | 31.59 | 36.67 |
| Solyc04g081450.2.1 | Tomato | nucleus | 33.94 | 36.21 |
| CDY43422 | Canola | nucleus | 30.55 | 36.0 |
| CDY57605 | Canola | nucleus | 19.58 | 34.25 |
| CDX83731 | Canola | nucleus | 30.81 | 33.71 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 28.72 | 26.51 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 21.67 | 21.61 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 21.41 | 21.52 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 20.89 | 20.89 |
| Os04t0117200-01 | Rice | cytosol | 21.41 | 19.81 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 9.4 | 19.35 |
| Zm00001d039489_P002 | Maize | nucleus | 18.28 | 18.82 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 19.06 | 16.82 |
| EES02317 | Sorghum | cytosol | 17.49 | 16.71 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 7.57 | 15.18 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 13.32 | 13.64 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 15.93 | 11.36 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 13.05 | 11.24 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 14.62 | 9.79 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 14.36 | 9.29 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 16.71 | 9.2 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 13.84 | 9.17 |
Protein Annotations
| EMBL:ACUP02005398 | EnsemblPlants:KRH36857 | EnsemblPlantsGene:GLYMA_09G028700 | EntrezGene:100812121 | ncoils:Coil | PANTHER:PTHR35992 |
| ProteinID:KRH36857 | ProteinID:KRH36857.1 | SEG:seg | UniParc:UPI00023CB310 | UniProt:I1L0J3 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr9:-:2354577..2357721
Molecular Weight (calculated)
43899.0 Da
IEP (calculated)
9.380
GRAVY (calculated)
-0.922
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTSRKAEPS NNDVVSSEHR NWSNIFKSLV QMVCSQQNQL HSFASRHKFL EDRLRMQHEG WVSDVRCHKD QISQMNGMLT FEEKKQSLEA AKADFALSLK
101: HREAAMLKWI LEHAEDELAD FKAWFEILSC KSSNGEDQGT AFKDTDLKKK GSTDRGNMST RNTAEKEKYS SENKDEFSRL KGEYDKLALE KYSEVTTLLA
201: EKKFMWNQYN VMENDYADKL RTKEAEVEKA NEKIKILVSS MEQLQSENYE KDSKISELQS KMAEMEAETK RLNNEISELS VELESLRKFR NSQVTPSVLN
301: RCTEGTKAPE SGVVKSNKSR RNMTLKKEIC TPDAPVPAKS SEKGTKTKSM KRKEAPVIPT SETPKLFSSG FKVPKLKSSV RVT
101: HREAAMLKWI LEHAEDELAD FKAWFEILSC KSSNGEDQGT AFKDTDLKKK GSTDRGNMST RNTAEKEKYS SENKDEFSRL KGEYDKLALE KYSEVTTLLA
201: EKKFMWNQYN VMENDYADKL RTKEAEVEKA NEKIKILVSS MEQLQSENYE KDSKISELQS KMAEMEAETK RLNNEISELS VELESLRKFR NSQVTPSVLN
301: RCTEGTKAPE SGVVKSNKSR RNMTLKKEIC TPDAPVPAKS SEKGTKTKSM KRKEAPVIPT SETPKLFSSG FKVPKLKSSV RVT
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.