CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92639
KRG93968
KRG96225
KRG97837
KRH00424
KRH01744
KRH07089
KRH07729
KRH12348
KRH22822
KRH25284
KRH25929
KRH30104
KRH30384
KRH31032
KRH34143
KRH37351
KRH40763
KRH42233
KRH43389
KRH44630
KRH46935
KRH47287
KRH53856
KRH58237
KRH58350
KRH59535
KRH62794
KRH64098
KRH67971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30860.1	KRG92639	AT1G09770.1	21798944
AT1G30860.1	KRH34143	AT1G09770.1	21798944
AT1G30860.1	KRH07729	AT1G61590.1	21798944
AT1G30860.1	KRH12348	AT2G01250.1	21798944
AT1G30860.1	KRH25929	AT2G01250.1	21798944
AT1G30860.1	KRH37351	AT2G01250.1	21798944
AT1G30860.1	KRH44630	AT2G01250.1	21798944
AT1G30860.1	KRH47287	AT2G01250.1	21798944
AT1G30860.1	KRH00424	AT2G38490.1	21798944
AT1G30860.1	KRH40763	AT2G38490.1	21798944
AT1G30860.1	KRG97837	AT2G39760.1	21798944
AT1G30860.1	KRH31032	AT2G39760.1	21798944
AT1G30860.1	KRH01744	AT2G43370.1	21798944
AT1G30860.1	KRH46935	AT2G43370.1	21798944
AT1G30860.1	KRG93968	AT3G01690.1	21798944
AT1G30860.1	KRH07089	AT3G01690.1	21798944
AT1G30860.1	KRH58237	AT3G01690.1	21798944
AT1G30860.1	KRG96225	AT3G11590.1	21798944
AT1G30860.1	KRH67971	AT3G11590.1	21798944
AT1G30860.1	KRH42233	AT3G60360.1	21798944
AT1G30860.1	KRH58350	AT3G60360.1	21798944
AT1G30860.1	KRH30104	AT4G28230.1	21798944
AT1G30860.1	KRH62794	AT4G28230.1	21798944
AT1G30860.1	KRH43389	AT5G09810.1	21798944
AT1G30860.1	KRH53856	AT5G09810.1	21798944
AT1G30860.1	KRH59535	AT5G09810.1	21798944
AT1G30860.1	KRH64098	AT5G09810.1	21798944
AT1G30860.1	KRH25284	AT5G22310.1	21798944
AT1G30860.1	KRH30384	AT5G22310.1	21798944
AT1G30860.1	KRH22822	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12155	Soybean	nucleus	56.18	56.49
VIT_01s0010g00340.t01	Wine grape	nucleus	26.46	33.47
CDY12454	Canola	nucleus	21.26	30.39
CDY52188	Canola	nucleus	22.02	29.64
CDY31650	Canola	nucleus, plastid	20.28	29.04
Bra005381.1-P	Field mustard	nucleus	20.28	28.86
Bra039871.1-P	Field mustard	nucleus	21.91	28.77
CDY02344	Canola	cytosol	21.15	28.34
AT2G34920.2	Thale cress	nucleus	20.07	27.78
Bra023148.1-P	Field mustard	nucleus	20.93	27.38
CDY09519	Canola	nucleus	20.72	26.64
CDX84276	Canola	endoplasmic reticulum, extracellular	19.41	26.44
Bra021939.1-P	Field mustard	nucleus, plastid	17.25	25.52
AT1G30860.1	Thale cress	cytosol	20.17	25.48
GSMUA_Achr4P33210_001	Banana	nucleus	14.97	25.41
GSMUA_Achr7P00390_001	Banana	nucleus	18.22	23.11
HORVU2Hr1G048520.1	Barley	plastid	15.29	21.93
PGSC0003DMT400035458	Potato	nucleus	24.3	21.64
TraesCS2A01G229600.2	Wheat	nucleus, plastid	17.25	21.52
CDX96975	Canola	cytosol	15.62	20.96
Solyc10g005220.2.1	Tomato	nucleus, plastid	21.37	20.91
TraesCS2D01G233500.1	Wheat	cytosol, plastid	17.14	20.87
TraesCS2B01G251300.1	Wheat	nucleus, plastid	16.38	20.57
Zm00001d021532_P001	Maize	cytosol, plastid	17.25	20.57
PGSC0003DMT400029374	Potato	nucleus, plastid	21.91	20.49
EER99396	Sorghum	plastid	16.92	20.21
Solyc02g082100.2.1	Tomato	vacuole	22.99	19.67
AT5G44690.1	Thale cress	nucleus	14.1	19.64
Os07t0499800-01	Rice	nucleus	15.62	19.15
Zm00001d006417_P002	Maize	plastid	12.04	18.91
CDY50063	Canola	cytosol	21.91	18.38
CDX78978	Canola	cytosol	20.61	16.78
AT4G20160.2	Thale cress	cytosol	21.58	16.41
CDY14941	Canola	nucleus	10.85	16.1
Bra013447.1-P	Field mustard	nucleus	21.15	15.78
KRG92104	Soybean	nucleus	9.44	10.26
KRH34682	Soybean	nucleus	9.44	10.25
KRH30548	Soybean	nucleus	7.92	8.49
KRH25125	Soybean	nucleus	7.05	7.61
KRH22786	Soybean	nucleus	6.94	7.54
KRH26545	Soybean	nucleus	6.07	7.04
Os03t0107500-00	Rice	plasma membrane	1.74	4.38
KRH66429	Soybean	nucleus	0.65	2.82

Protein Annotations

EntrezGene:100796661	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02005420	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G048200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1L128
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH37161	ProteinID:KRH37161	ProteinID:KRH37161.1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF103	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002948C9C
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:4163708..4168045

Molecular Weight (calculated)

104435.0 Da

IEP (calculated)

4.766

GRAVY (calculated)

-1.079

Length

922 amino acids

Sequence
(BLAST)

001: MASSQIEIAS SSPFGCALRD RNHREACSRE SGNVKSTHHH HHANFQRNMK NFVMDLNMCM AVSSDSKANE NENNSSSSSS INNHRKAPKN KQLERLLITR
101: ANPFINNSNV ASNETSLASL ISPRHSGLLD RWATRQACQM VSNLENEAEL LSMDGNDMLP RTSSSSEEES SFSSETRNGG GASSLVQIWE KRLNQSSVSK
201: PNTPRERIGS TSSSINENAN AFSPENVNAF SGEEQCFDGP SGNEESFTSS SFPDWESSDQ SLSPSRRSES DRVRVADIIK KLTSTSQNQC PTPSFADDNE
301: HEGYGSSVTG SPCRERECDQ QHSEQNRRVN CSLRIRGRRA YIDLLAQMEN DRLGELNNLV ERGAVSKFPQ RGRIQAMLRL RLLQRGVAAN DQPRQKSTAS
401: EVNNSQPHGY AIMQLRFSSG AELRTPVQTE LANPRSPQRE TVNKTTQLDN SVTTDQLSKD TSNKKGHGNA NHATESTQKS ASQTRIDHST EEAHPSSDIK
501: APQNDSRETT EATTSTIDSN LNEMTADREE TSNQQNAMAK SSNDETVNEE EESNQQHAET SYEETIEEAS NQNYAESSYD DEMEEEVEEI DQNCYETNYD
601: WISEISRPRS YWEECRQAWY REMLETGTQN EDIRRLLERR TVSSFLSSDF RGRMDRLMES HRGTQTHLVN SQDREEDSQG LMAFLQERLH STRASQDGSN
701: AREEEDESRN QDEEEEDNTD EQEQEHEEEH EKESLISGSY HEVGDYSNQS SSWSYRDNEA GDDFDRVVSS SPQPYQSQSF YSECRHSSST NHHSIEMELI
801: YDLRGHMEQL YSEISELRKS IKGCLEMQME LQQSIKQEVQ TASVMQCKHT ITVKKEEKKS NDTTLKKGNC CICYEMKVDS VLYRCGHMCT CLKCANELQW
901: NSGKCPICRA KIVDVVHVYV DS

Best Arabidopsis Sequence Match ( AT1G30860.1 )
(BLAST)

001: MVSSPQRFGL ILRDRNQNAG VFQKNLKSPV KEVLKSHVSD ENLVDSWIET HNNKNNRVLE SPLESKRNDN LVASSLVQIW EARLNRSNGG NSPSSSQSTA
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN

Arabidopsis Description

At1g30860 [Source:UniProtKB/TrEMBL;Acc:Q6NQ80]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.