Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 97.41 | 94.45 |
| HORVU2Hr1G048520.1 | Barley | plastid | 64.99 | 74.18 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 62.94 | 62.52 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 54.22 | 51.49 |
| EER99396 | Sorghum | plastid | 53.0 | 50.39 |
| Os07t0499800-01 | Rice | nucleus | 48.77 | 47.61 |
| Zm00001d006417_P002 | Maize | plastid | 32.83 | 41.06 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 22.62 | 30.57 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 27.11 | 27.37 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 19.89 | 20.03 |
| CDY31650 | Canola | nucleus, plastid | 17.03 | 19.41 |
| Bra005381.1-P | Field mustard | nucleus | 16.76 | 18.98 |
| AT2G34920.2 | Thale cress | nucleus | 16.76 | 18.47 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 16.76 | 18.17 |
| CDY52188 | Canola | nucleus | 16.35 | 17.52 |
| Bra039871.1-P | Field mustard | nucleus | 16.21 | 16.95 |
| CDY12454 | Canola | nucleus | 14.71 | 16.74 |
| AT1G30860.1 | Thale cress | cytosol | 16.48 | 16.58 |
| KRH37161 | Soybean | nucleus | 20.57 | 16.38 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 13.9 | 16.37 |
| CDX96975 | Canola | cytosol | 15.12 | 16.16 |
| CDY02344 | Canola | cytosol | 14.99 | 15.99 |
| Bra023148.1-P | Field mustard | nucleus | 15.12 | 15.74 |
| KRH12155 | Soybean | nucleus | 19.48 | 15.59 |
| CDY09519 | Canola | nucleus | 15.12 | 15.48 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 18.39 | 14.33 |
| PGSC0003DMT400035458 | Potato | nucleus | 19.62 | 13.91 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 18.66 | 13.89 |
| Solyc02g082100.2.1 | Tomato | vacuole | 19.21 | 13.08 |
| CDY50063 | Canola | cytosol | 16.76 | 11.19 |
| CDY14941 | Canola | nucleus | 9.4 | 11.11 |
| CDX78978 | Canola | cytosol | 16.21 | 10.51 |
| AT5G44690.1 | Thale cress | nucleus | 9.26 | 10.27 |
| Bra013447.1-P | Field mustard | nucleus | 16.62 | 9.87 |
| AT4G20160.2 | Thale cress | cytosol | 15.94 | 9.65 |
| TraesCS4B01G003100.1 | Wheat | nucleus | 7.9 | 8.16 |
| TraesCS6B01G449800.2 | Wheat | nucleus | 7.77 | 7.42 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G251300.1 | EnsemblPlantsGene:TraesCS2B01G251300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF11 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | TIGR:cd16647 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:262899711..262906270
Molecular Weight (calculated)
81885.3 Da
IEP (calculated)
6.647
GRAVY (calculated)
-0.754
Length
734 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSLAAMPH DSAPWRDPST STSTSRHRRF FNVNVLIPPP RHSFSDAAAA PAAPAEPTPR RRRIIASEPP PPADARRRDR EAELSALASA TRPVAARAAV
101: FRAPSPAPSD ASSTTTAGPD LPPSGPRASS LIQRWREIEA VGPVTPRVSG DVTSESDGSP RRRVGCIVKK LSGAASLPEE DLEAANNELP LSQSAPPSPT
201: QLRNAVESLA LHIKGTRPPK LVVRTVRGRR AVEELVARMA HRRRRELAAL ADRHAVSRFG HKGRIQSMLR LKLLRHGDAI NDEVWNLLRP VRPHPPKCRP
301: EASRDDSSKT DSQDANECSL QNNRADEQHS DDRNPSAEKS IGLAIESLVN SDGSGNRQYD EKIDTKGNQC QEDRVNLVNS CVHYQESSKA SNFARYDDHR
401: VVYDNQYMDD ISPSTISTSC ELQETPSSRG ETLREEDNQS LNGSWDERAL WMSSLGWPAP VDSMSPDSWH QGTIGDMENH NQIEFNDRPW IDSPNSWRSL
501: HIATQADCRD LSGNADICNL LESKKVSKSL DSDFSNKMNH LLRAILQKQR QQHMIDEFGG YYPENLYWQQ NDEPRNEDQV SSAPCSLAPV SHVTAHHQEN
601: WQHSSFEHQQ HENQNLFEME VRVRSEMAQI HHEIYELRKL AETCIASQVK MQHSIKEEVC SALREAGLMP SQPDITAKKG TCCICHEMQV DSLLYRCGHM
701: CTCFNCADQL KSSSGSCPIC QSPIDDVVRA HLNF
101: FRAPSPAPSD ASSTTTAGPD LPPSGPRASS LIQRWREIEA VGPVTPRVSG DVTSESDGSP RRRVGCIVKK LSGAASLPEE DLEAANNELP LSQSAPPSPT
201: QLRNAVESLA LHIKGTRPPK LVVRTVRGRR AVEELVARMA HRRRRELAAL ADRHAVSRFG HKGRIQSMLR LKLLRHGDAI NDEVWNLLRP VRPHPPKCRP
301: EASRDDSSKT DSQDANECSL QNNRADEQHS DDRNPSAEKS IGLAIESLVN SDGSGNRQYD EKIDTKGNQC QEDRVNLVNS CVHYQESSKA SNFARYDDHR
401: VVYDNQYMDD ISPSTISTSC ELQETPSSRG ETLREEDNQS LNGSWDERAL WMSSLGWPAP VDSMSPDSWH QGTIGDMENH NQIEFNDRPW IDSPNSWRSL
501: HIATQADCRD LSGNADICNL LESKKVSKSL DSDFSNKMNH LLRAILQKQR QQHMIDEFGG YYPENLYWQQ NDEPRNEDQV SSAPCSLAPV SHVTAHHQEN
601: WQHSSFEHQQ HENQNLFEME VRVRSEMAQI HHEIYELRKL AETCIASQVK MQHSIKEEVC SALREAGLMP SQPDITAKKG TCCICHEMQV DSLLYRCGHM
701: CTCFNCADQL KSSSGSCPIC QSPIDDVVRA HLNF
001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
Arabidopsis Description
Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.