Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78978 | Canola | cytosol | 57.14 | 55.48 |
| Bra013447.1-P | Field mustard | nucleus | 56.6 | 50.32 |
| CDY31650 | Canola | nucleus, plastid | 18.29 | 31.21 |
| AT4G20160.2 | Thale cress | cytosol | 34.3 | 31.08 |
| CDY02344 | Canola | cytosol | 19.2 | 30.67 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 18.84 | 30.58 |
| CDY12454 | Canola | nucleus | 16.74 | 28.53 |
| CDY09519 | Canola | nucleus | 18.38 | 28.17 |
| CDY52188 | Canola | nucleus | 17.47 | 28.03 |
| CDX96975 | Canola | cytosol | 15.65 | 25.04 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 11.28 | 22.84 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 14.56 | 21.95 |
| KRH37161 | Soybean | nucleus | 18.38 | 21.91 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 18.11 | 21.13 |
| KRH12155 | Soybean | nucleus | 16.83 | 20.17 |
| CDY14941 | Canola | nucleus | 11.28 | 19.97 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 17.38 | 19.37 |
| PGSC0003DMT400035458 | Potato | nucleus | 17.47 | 18.55 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 11.92 | 18.02 |
| HORVU2Hr1G048520.1 | Barley | plastid | 10.37 | 17.73 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 11.74 | 17.46 |
| Solyc02g082100.2.1 | Tomato | vacuole | 16.65 | 16.98 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 11.19 | 16.76 |
| Os07t0499800-01 | Rice | nucleus | 11.19 | 16.36 |
| Zm00001d006417_P002 | Maize | plastid | 8.64 | 16.18 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 10.92 | 15.85 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 11.01 | 15.65 |
| EER99396 | Sorghum | plastid | 10.83 | 15.41 |
| CDY00948 | Canola | cytosol | 6.73 | 10.26 |
| CDY08599 | Canola | nucleus | 6.28 | 9.54 |
| CDY41355 | Canola | nucleus | 6.46 | 9.43 |
| CDY04520 | Canola | cytosol, plastid | 5.64 | 9.14 |
| CDX70223 | Canola | cytosol | 6.28 | 8.9 |
| CDY44857 | Canola | nucleus | 6.28 | 8.88 |
| CDX71406 | Canola | cytosol | 2.73 | 5.37 |
| Os03t0107500-00 | Rice | plasma membrane | 1.36 | 4.11 |
Protein Annotations
| EnsemblPlants:CDY50063 | EnsemblPlantsGene:GSBRNA2T00095826001 | Gene3D:3.30.40.10 | GO:A0A078IM18 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDY50063 | ProteinID:CDY50063.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EE2265 |
| UniProt:A0A078IM18 | MapMan:35.2 | : | : | : | : |
Description
BnaCnng18700DBnaCnng18700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM18]
Coordinates
chrLK032877:+:92465..96541
Molecular Weight (calculated)
125302.0 Da
IEP (calculated)
4.811
GRAVY (calculated)
-1.127
Length
1099 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMTSDVETSQ AFNYVLSPHE RCIRGDNSNN NKKTKNNNSN NNNVRNIHVA FEKNLNVFVR DHLDNVTVAS GENVDESTKA VSEYSSNKSS VLKTEEPRLS
0101: SSSIGSDPDP NLPHPSQQDK NASRKETMPA SSLVQIWEAR TTSSNQNQTQ TDSRTSSSGS NVLENSESLI EEPVKEYETI QPIQEGKKEE HKEEEIESDS
0201: QSVSGEKERE GVRVMDIIRK LSSDTETTTG NNDNGSSSNE NGKEVQTTTT ETRTFPQVSC SPRIRGRQAF ADLLIQMMRD REKELASLLD RHCVSKFTHR
0301: GRIQSTLRIR CYERCIAIQD KYRSKSWAAG SDLNRAGGSD LNRSPRGSGV MHLLKEKNKT NSENISSSIS SRSRVMDKDP QKSVEKKVFE ETMEKIDVKE
0401: VQEVVSAKEA VLSELVENKN GLKKSIGETI KKEVAERRGE KRETKPIGET LQKETTEGRG DKGETKENDI AKENVQGNAL VGIAEKVNRW NSEEKMNKSR
0501: WTEKGKANTE RVDKKDVLEE ATRRTNNVQS GGKSNTTCEF PEKEVRRKEK DDCVSVETKS IEIRDPQQAT AQEEEKVVQE TTTKSDLSET KNNKNGLKKH
0601: TERSEEVKEV EESLEGNTFM GIAEKVKMWN SKYKKSRRRY SMDRGKGKTG KPNTERNEVL QEASRRIINV KTEERSITTS KEKVVGTQEM KDKRETSREI
0701: KQCEPEEKER RMEEEELCSD KAKSKDITEV KIMSSQEVII PAKESACHGS PERGKEQSSS PQDEETKKEE CEEKREDVKE VAIEFANDWD EKEDDDDDDD
0801: YEDYGDFDDY IGEISTDWIY DVSRPRSYWE ELRKERYLEV LNTESDKKDI CNLIQSRTVS NFLTSDLRQK IDNLMTSLVQ NHLGVPINQE EDEEEKEEWV
0901: EECSARNQED IETEEEPEKT NLEAESDTIL EADHDACSQS SERSSTLMIS WSFRDQDIDK DHEPTTSLSL PEPSSATSQT TQEMQMISDL REQMEQLQLE
1001: MLELRNTVKS CTDMQLHLQK SSTQDSCRSG SSAEQRVETK NPLKRKCCVC SEMPVDSLLY RCGHMCTCLK CAHELQWSSK KCPICMAPIV DVVRAFLDA
0101: SSSIGSDPDP NLPHPSQQDK NASRKETMPA SSLVQIWEAR TTSSNQNQTQ TDSRTSSSGS NVLENSESLI EEPVKEYETI QPIQEGKKEE HKEEEIESDS
0201: QSVSGEKERE GVRVMDIIRK LSSDTETTTG NNDNGSSSNE NGKEVQTTTT ETRTFPQVSC SPRIRGRQAF ADLLIQMMRD REKELASLLD RHCVSKFTHR
0301: GRIQSTLRIR CYERCIAIQD KYRSKSWAAG SDLNRAGGSD LNRSPRGSGV MHLLKEKNKT NSENISSSIS SRSRVMDKDP QKSVEKKVFE ETMEKIDVKE
0401: VQEVVSAKEA VLSELVENKN GLKKSIGETI KKEVAERRGE KRETKPIGET LQKETTEGRG DKGETKENDI AKENVQGNAL VGIAEKVNRW NSEEKMNKSR
0501: WTEKGKANTE RVDKKDVLEE ATRRTNNVQS GGKSNTTCEF PEKEVRRKEK DDCVSVETKS IEIRDPQQAT AQEEEKVVQE TTTKSDLSET KNNKNGLKKH
0601: TERSEEVKEV EESLEGNTFM GIAEKVKMWN SKYKKSRRRY SMDRGKGKTG KPNTERNEVL QEASRRIINV KTEERSITTS KEKVVGTQEM KDKRETSREI
0701: KQCEPEEKER RMEEEELCSD KAKSKDITEV KIMSSQEVII PAKESACHGS PERGKEQSSS PQDEETKKEE CEEKREDVKE VAIEFANDWD EKEDDDDDDD
0801: YEDYGDFDDY IGEISTDWIY DVSRPRSYWE ELRKERYLEV LNTESDKKDI CNLIQSRTVS NFLTSDLRQK IDNLMTSLVQ NHLGVPINQE EDEEEKEEWV
0901: EECSARNQED IETEEEPEKT NLEAESDTIL EADHDACSQS SERSSTLMIS WSFRDQDIDK DHEPTTSLSL PEPSSATSQT TQEMQMISDL REQMEQLQLE
1001: MLELRNTVKS CTDMQLHLQK SSTQDSCRSG SSAEQRVETK NPLKRKCCVC SEMPVDSLLY RCGHMCTCLK CAHELQWSSK KCPICMAPIV DVVRAFLDA
0001: MASSEVEMSS CQTFNCVLSR PHERCTQRDN NTNNNKKKNN NNNNVRNIHV AAFEKNLNVF VRDHLENCSV SVDDVVDDSI KAVPECSSNK SSVSDHRLSK
0101: TEESRQDVPS SSSSLGSDSD PNSGQPENPS RNAASSLVQI WEARTTQQPP SSNQSLIDSR TSSMGSNALE NSESLESVKE SQMIQPIEEC NNEEEEEEIE
0201: CAPPPLESGE KDREGVRVMD IIRKLSNDSE TITNNDNGSS GNDNSKEVQT TEARSFPQVA CSPRIRGRQA LADLLVQMTR DREKDLACLR ERHCVSKFTN
0301: RGRIQSTLRI RCYERCLAIQ GRHRSKSTSA GSDSNRSSRG SGVMHLLREK YKANSENIET GASTSHASTR GRIMDKDPHK ATEKKVLQET IEKSGVKEIK
0401: EVVSAVENAK KGVLSEISEN RNGLKKLAGE TIQKETVEGK GEKRETKEKV ISKESLEGKG EKRESTKEKA IAKESVAEKA LVGIAEKVNL WNSDEKMNRR
0501: KVVEKGKTEG NTNTERVERN DVLEEATRRI LSVESAERSS TTTSKETMTR CEVAEKVVKG KKKEDFVSLE SNKSKEVEDG NIKPQGVTTQ ADSCLRKPAI
0601: EEKVLQETTV KSDLKKPTEK ESREERREIE EEESTSMGIA EKVNLWNSKE KKNRRKAMEK GKGKTEGKAI TETNELLQEA SRRISNVETA ERSIDTSWIT
0701: VVKVVGDRVI MDKRKSSGET TRSAEIGGGK KEEDLASVEA KSKDVIEDKN MNPQAVIHGS KERDKERNSS QNGEETLSLR NSEAKSTKEI ERQEVTQEEK
0801: SVSHGSREKD KERNSLQYGE KMCFLRNSEA KSTKEIERNK SQEVSQGEES ASHGSRESAK EKNSSQQDDE TSTHRNPNDK KGIKEPEDEE SKKVEREETG
0901: ENVEEASVEF VNDWDGNEME EEEEEEYGDY FNGDDDWIHD ISRPRSYWED LRKERYLEVL NTESEKKDIC NLIERRTVSN FLTSDLRQKI DNLMITRVQS
1001: HIGVPLNQIE EGDEYEEEWE VECSARNEED NETEEEPEKT NLEAPSDVCS QSSARSSTMM SWNFRDQDID KDNEPTTSLS LPEPLVPTNQ STQDMQTISD
1101: LKEQMEQLQR EMLELRNTVK SCIDMQLHFQ KSVTQDLSRS GSSAEQRVDP KKDPLKRKCC VCSEMPVDSL LYRYFCLIYR NFKSETLK
0101: TEESRQDVPS SSSSLGSDSD PNSGQPENPS RNAASSLVQI WEARTTQQPP SSNQSLIDSR TSSMGSNALE NSESLESVKE SQMIQPIEEC NNEEEEEEIE
0201: CAPPPLESGE KDREGVRVMD IIRKLSNDSE TITNNDNGSS GNDNSKEVQT TEARSFPQVA CSPRIRGRQA LADLLVQMTR DREKDLACLR ERHCVSKFTN
0301: RGRIQSTLRI RCYERCLAIQ GRHRSKSTSA GSDSNRSSRG SGVMHLLREK YKANSENIET GASTSHASTR GRIMDKDPHK ATEKKVLQET IEKSGVKEIK
0401: EVVSAVENAK KGVLSEISEN RNGLKKLAGE TIQKETVEGK GEKRETKEKV ISKESLEGKG EKRESTKEKA IAKESVAEKA LVGIAEKVNL WNSDEKMNRR
0501: KVVEKGKTEG NTNTERVERN DVLEEATRRI LSVESAERSS TTTSKETMTR CEVAEKVVKG KKKEDFVSLE SNKSKEVEDG NIKPQGVTTQ ADSCLRKPAI
0601: EEKVLQETTV KSDLKKPTEK ESREERREIE EEESTSMGIA EKVNLWNSKE KKNRRKAMEK GKGKTEGKAI TETNELLQEA SRRISNVETA ERSIDTSWIT
0701: VVKVVGDRVI MDKRKSSGET TRSAEIGGGK KEEDLASVEA KSKDVIEDKN MNPQAVIHGS KERDKERNSS QNGEETLSLR NSEAKSTKEI ERQEVTQEEK
0801: SVSHGSREKD KERNSLQYGE KMCFLRNSEA KSTKEIERNK SQEVSQGEES ASHGSRESAK EKNSSQQDDE TSTHRNPNDK KGIKEPEDEE SKKVEREETG
0901: ENVEEASVEF VNDWDGNEME EEEEEEYGDY FNGDDDWIHD ISRPRSYWED LRKERYLEVL NTESEKKDIC NLIERRTVSN FLTSDLRQKI DNLMITRVQS
1001: HIGVPLNQIE EGDEYEEEWE VECSARNEED NETEEEPEKT NLEAPSDVCS QSSARSSTMM SWNFRDQDID KDNEPTTSLS LPEPLVPTNQ STQDMQTISD
1101: LKEQMEQLQR EMLELRNTVK SCIDMQLHFQ KSVTQDLSRS GSSAEQRVDP KKDPLKRKCC VCSEMPVDSL LYRYFCLIYR NFKSETLK
Arabidopsis Description
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily /.../n (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). [Source:TAIR;Acc:AT4G20160]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.