Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P00390_001 | Banana | nucleus | 45.86 | 34.25 |
| HORVU2Hr1G048520.1 | Barley | plastid | 30.76 | 25.97 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 30.57 | 22.62 |
| EER99396 | Sorghum | plastid | 31.31 | 22.02 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 30.39 | 21.8 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 29.28 | 21.52 |
| Os07t0499800-01 | Rice | nucleus | 28.18 | 20.35 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 28.73 | 20.18 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 26.52 | 19.75 |
| CDY02344 | Canola | cytosol | 24.68 | 19.48 |
| CDY31650 | Canola | nucleus, plastid | 23.02 | 19.41 |
| Bra005381.1-P | Field mustard | nucleus | 22.65 | 18.98 |
| AT2G34920.2 | Thale cress | nucleus | 23.2 | 18.92 |
| Zm00001d006417_P002 | Maize | plastid | 20.26 | 18.74 |
| Bra023148.1-P | Field mustard | nucleus | 23.76 | 18.3 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 22.28 | 17.87 |
| AT1G30860.1 | Thale cress | cytosol | 23.76 | 17.67 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 20.26 | 17.66 |
| CDY09519 | Canola | nucleus | 23.2 | 17.57 |
| CDY52188 | Canola | nucleus | 21.92 | 17.37 |
| CDY12454 | Canola | nucleus | 20.63 | 17.36 |
| Bra039871.1-P | Field mustard | nucleus | 21.92 | 16.95 |
| CDX96975 | Canola | cytosol | 19.34 | 15.28 |
| KRH37161 | Soybean | nucleus | 25.41 | 14.97 |
| KRH12155 | Soybean | nucleus | 25.05 | 14.83 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 24.86 | 14.33 |
| PGSC0003DMT400035458 | Potato | nucleus | 26.52 | 13.91 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 23.57 | 12.98 |
| Solyc02g082100.2.1 | Tomato | vacuole | 25.6 | 12.89 |
| CDY14941 | Canola | nucleus | 13.81 | 12.08 |
| AT5G44690.1 | Thale cress | nucleus | 14.55 | 11.93 |
| CDY50063 | Canola | cytosol | 22.84 | 11.28 |
| CDX78978 | Canola | cytosol | 23.02 | 11.04 |
| AT4G20160.2 | Thale cress | cytosol | 22.84 | 10.22 |
| Bra013447.1-P | Field mustard | nucleus | 21.92 | 9.63 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 10.31 | 8.41 |
| GSMUA_Achr1P17370_001 | Banana | nucleus | 10.68 | 8.33 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 11.05 | 8.19 |
| GSMUA_Achr2P03990_001 | Banana | nucleus | 10.5 | 8.11 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 11.05 | 7.97 |
| GSMUA_Achr11P... | Banana | nucleus | 10.13 | 7.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 10.5 | 7.39 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P33210_001 | EnsemblPlants:GSMUA_Achr4T33210_001 | EnsemblPlantsGene:GSMUA_Achr4G33210_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF11 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000296D669 | UniProt:M0SU83 | MapMan:35.2 |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G33210_001]
Coordinates
chr4:-:29697966..29702759
Molecular Weight (calculated)
61721.3 Da
IEP (calculated)
6.327
GRAVY (calculated)
-0.917
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTATSEPV NPPSSSNEND KGRVGSIVKM LSSGDRTRSS MAPLNHDTKP MRRENPVTTD KADSFCSTGS SSLRLRGLRG RREMEDLVAR MEEERRKELA
101: ALADHQCVSR FAHRGRLQSM LRLRSLRRQV TEQDHLRAPA RTLELDQSHN GATISFLRER FNQRGNHSGS RKPTPESSSS VQIQFAMDTE DSGYTCSTDQ
201: FTRDNNQYQG TVSPRDSEST PSRTNSPCSR SNDTQEASHS IDGSWDEQNV WMSNIDWQRP ADSSLTNGWQ GEATVEELES YPQQNASSWI DEGPSNSWRQ
301: WRVRRRPPCH DLFQNFSDNA EIRDLLERRR VSTSLESDFC DKMNQMLLSF LQRQGKQGFD ENFAENDEDL PCWQQNGEYQ NTEQEASVSS SLIPLQYHTL
401: HHQESWQHNS FAHQSSNNVP DMEAMHKLRS DMAQIHDEIS ELRKLVKSCM EWQAKLQHSI KQDILDAIFQ STGSGSSLHN LGATSARKGG CYICSEMQVD
501: SVFYRCGHMC TCYKCACELQ WNSGKCPICG SPIMDVVRAF PNS
101: ALADHQCVSR FAHRGRLQSM LRLRSLRRQV TEQDHLRAPA RTLELDQSHN GATISFLRER FNQRGNHSGS RKPTPESSSS VQIQFAMDTE DSGYTCSTDQ
201: FTRDNNQYQG TVSPRDSEST PSRTNSPCSR SNDTQEASHS IDGSWDEQNV WMSNIDWQRP ADSSLTNGWQ GEATVEELES YPQQNASSWI DEGPSNSWRQ
301: WRVRRRPPCH DLFQNFSDNA EIRDLLERRR VSTSLESDFC DKMNQMLLSF LQRQGKQGFD ENFAENDEDL PCWQQNGEYQ NTEQEASVSS SLIPLQYHTL
401: HHQESWQHNS FAHQSSNNVP DMEAMHKLRS DMAQIHDEIS ELRKLVKSCM EWQAKLQHSI KQDILDAIFQ STGSGSSLHN LGATSARKGG CYICSEMQVD
501: SVFYRCGHMC TCYKCACELQ WNSGKCPICG SPIMDVVRAF PNS
001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
Arabidopsis Description
EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.