Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 94.45 | 97.41 |
| HORVU2Hr1G048520.1 | Barley | plastid | 63.67 | 74.96 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 63.14 | 64.68 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 54.43 | 53.3 |
| EER99396 | Sorghum | plastid | 53.37 | 52.33 |
| Os07t0499800-01 | Rice | nucleus | 47.95 | 48.27 |
| Zm00001d006417_P002 | Maize | plastid | 33.16 | 42.76 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 21.8 | 30.39 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 27.21 | 28.34 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 19.55 | 20.3 |
| CDY31650 | Canola | nucleus, plastid | 16.91 | 19.88 |
| Bra005381.1-P | Field mustard | nucleus | 16.91 | 19.75 |
| AT2G34920.2 | Thale cress | nucleus | 16.38 | 18.62 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 16.64 | 18.61 |
| CDY52188 | Canola | nucleus | 15.85 | 17.52 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 14.27 | 17.34 |
| KRH37161 | Soybean | nucleus | 20.87 | 17.14 |
| Bra039871.1-P | Field mustard | nucleus | 15.85 | 17.09 |
| AT1G30860.1 | Thale cress | cytosol | 16.38 | 16.99 |
| CDY12454 | Canola | nucleus | 14.4 | 16.9 |
| Bra023148.1-P | Field mustard | nucleus | 15.19 | 16.31 |
| CDX96975 | Canola | cytosol | 14.8 | 16.3 |
| KRH12155 | Soybean | nucleus | 19.68 | 16.25 |
| CDY02344 | Canola | cytosol | 14.66 | 16.13 |
| CDY09519 | Canola | nucleus | 14.93 | 15.76 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 17.97 | 14.44 |
| PGSC0003DMT400035458 | Potato | nucleus | 19.29 | 14.11 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 18.36 | 14.1 |
| Solyc02g082100.2.1 | Tomato | vacuole | 18.89 | 13.27 |
| CDY14941 | Canola | nucleus | 9.51 | 11.59 |
| CDY50063 | Canola | cytosol | 15.85 | 10.92 |
| AT5G44690.1 | Thale cress | nucleus | 9.25 | 10.57 |
| CDX78978 | Canola | cytosol | 15.59 | 10.42 |
| Bra013447.1-P | Field mustard | nucleus | 16.12 | 9.87 |
| AT4G20160.2 | Thale cress | cytosol | 15.59 | 9.73 |
| TraesCS4D01G003000.2 | Wheat | nucleus | 8.45 | 8.99 |
| TraesCS4D01G354300.1 | Wheat | plastid | 7.79 | 8.32 |
| TraesCS6D01G389100.1 | Wheat | nucleus | 8.06 | 7.96 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G233500.1 | EnsemblPlantsGene:TraesCS2D01G233500 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF11 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | TIGR:cd16647 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:208537308..208542552
Molecular Weight (calculated)
83981.8 Da
IEP (calculated)
6.615
GRAVY (calculated)
-0.712
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSLAAMPH DSAPWRDPST STSTSRHRRF FNVNVLIPPP RHSFSDAAAA APAAPAEPTP RRRRIILERW AAAAAAATAS EPLPPADARR RDREAELSAL
101: ASATRPVAAR AAVFRAPSPA PSDASSTTTA GPDLPPSGPR ASSLIQRWRE IEAVGPVTPR ASGDVTSESD GSPRGRVGCI VKKLSGAASL PEEDLDAANN
201: ELPLSQSAPP SPTQLRNAVE SLAVHIKGTR LPKLVVRTVR GRRAVEELVA RMAHRRRREL AALAERHAVS RFAHKGRIQS MLRLKLLRHG DAINDEVWNL
301: LRPVRPHPPK CRPEASRDDS SKTDSQDANE CSLQDNRADE QHSDDRNPSA AKSTGLAIES LVNSDGSGNR QYDEKIDTKG NQCQEDRVNL VNSCVHNQES
401: SKASSFPRYD DHRVVYDNQY MDDISPSTIS TSCELQETPS SRGELQETPS SRGDILREED NQSLNGSWDE RALWMSSLGW PAPVDSMSPD SWHQGTIGDM
501: ENHNQIEFND RPWIDSPNSW RSLHIATQAD CRDLSGNADI CNLLESKKVS KSLDSDFSNK MNHLLRAILQ KQRQQHMIDE FGGYYPEHLY WQQNDEPRNE
601: DQVASAPCSL APVSHVTAHH QENWQHSSFE HQQHENQNLL EMEVRVRSEM AQIHHEIYEL RKLAETCIAS QVKMQHSIKE EVCSALREAG LMPSKPDITA
701: KKGTCCICHE MQVDSLLYRC GHMCTCFNCA DQLKSSSGSC PICQSPIDDV VRAHLNF
101: ASATRPVAAR AAVFRAPSPA PSDASSTTTA GPDLPPSGPR ASSLIQRWRE IEAVGPVTPR ASGDVTSESD GSPRGRVGCI VKKLSGAASL PEEDLDAANN
201: ELPLSQSAPP SPTQLRNAVE SLAVHIKGTR LPKLVVRTVR GRRAVEELVA RMAHRRRREL AALAERHAVS RFAHKGRIQS MLRLKLLRHG DAINDEVWNL
301: LRPVRPHPPK CRPEASRDDS SKTDSQDANE CSLQDNRADE QHSDDRNPSA AKSTGLAIES LVNSDGSGNR QYDEKIDTKG NQCQEDRVNL VNSCVHNQES
401: SKASSFPRYD DHRVVYDNQY MDDISPSTIS TSCELQETPS SRGELQETPS SRGDILREED NQSLNGSWDE RALWMSSLGW PAPVDSMSPD SWHQGTIGDM
501: ENHNQIEFND RPWIDSPNSW RSLHIATQAD CRDLSGNADI CNLLESKKVS KSLDSDFSNK MNHLLRAILQ KQRQQHMIDE FGGYYPEHLY WQQNDEPRNE
601: DQVASAPCSL APVSHVTAHH QENWQHSSFE HQQHENQNLL EMEVRVRSEM AQIHHEIYEL RKLAETCIAS QVKMQHSIKE EVCSALREAG LMPSKPDITA
701: KKGTCCICHE MQVDSLLYRC GHMCTCFNCA DQLKSSSGSC PICQSPIDDV VRAHLNF
001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL
Arabidopsis Description
Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.