Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G452400.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS5D01G462800.1 | Wheat | cytosol, golgi | 99.18 | 99.18 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 97.95 | 96.76 |
| TraesCS2B01G453900.1 | Wheat | cytosol, golgi, unclear | 93.03 | 93.03 |
| CDX95588 | Canola | cytosol | 20.49 | 92.59 |
| Os04t0605900-01 | Rice | plastid | 91.39 | 91.39 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 90.16 | 90.16 |
| Zm00001d026254_P001 | Maize | plastid | 90.16 | 89.43 |
| KXG27062 | Sorghum | cytosol | 84.84 | 88.46 |
| Zm00001d050193_P001 | Maize | cytosol, plasma membrane, plastid | 88.11 | 87.76 |
| OQU75620 | Sorghum | cytosol | 88.11 | 87.76 |
| KXG24783 | Sorghum | cytosol | 88.11 | 87.76 |
| Zm00001d024373_P001 | Maize | cytosol | 87.7 | 86.64 |
| Zm00001d030114_P001 | Maize | cytosol | 86.48 | 83.73 |
| GSMUA_Achr4P05780_001 | Banana | cytosol | 83.2 | 83.2 |
| GSMUA_Achr11P... | Banana | cytosol | 81.97 | 81.97 |
| GSMUA_Achr10P... | Banana | cytosol | 81.15 | 81.15 |
| PGSC0003DMT400075548 | Potato | cytosol | 77.46 | 78.75 |
| CDY17884 | Canola | cytosol, extracellular | 77.87 | 78.51 |
| Bra004806.1-P | Field mustard | cytosol | 77.87 | 78.51 |
| KRH47287 | Soybean | nucleus | 77.87 | 78.19 |
| KRH44630 | Soybean | cytosol | 77.87 | 78.19 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 77.46 | 78.1 |
| PGSC0003DMT400051218 | Potato | cytosol | 77.46 | 78.1 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 27.87 | 77.27 |
| Bra017461.1-P | Field mustard | cytosol | 76.64 | 77.27 |
| Bra037665.1-P | Field mustard | cytosol | 76.64 | 77.27 |
| AT2G01250.1 | Thale cress | cytosol | 76.64 | 77.27 |
| PGSC0003DMT400053653 | Potato | cytosol | 77.46 | 77.14 |
| CDX83440 | Canola | cytosol, extracellular | 76.64 | 76.95 |
| Bra014334.1-P | Field mustard | cytosol | 76.23 | 76.86 |
| CDX77810 | Canola | cytosol, extracellular | 76.23 | 76.86 |
| CDY17686 | Canola | cytosol | 76.23 | 76.86 |
| CDY41074 | Canola | cytosol | 76.23 | 76.86 |
| CDY40393 | Canola | cytosol | 76.23 | 76.86 |
| CDY25941 | Canola | cytosol | 76.23 | 76.86 |
| CDY37358 | Canola | cytosol | 75.82 | 76.45 |
| KRH37351 | Soybean | endoplasmic reticulum | 75.41 | 76.03 |
| Bra024895.1-P | Field mustard | cytosol | 75.41 | 76.03 |
| Bra000341.1-P | Field mustard | cytosol | 61.07 | 76.02 |
| AT2G44120.2 | Thale cress | cytosol | 76.64 | 75.71 |
| AT3G13580.3 | Thale cress | cytosol | 75.41 | 75.41 |
| CDY30456 | Canola | cytosol | 77.46 | 73.54 |
| GSMUA_Achr4P12660_001 | Banana | cytosol | 80.74 | 67.93 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 75.41 | 67.65 |
| KXG27000 | Sorghum | plastid | 75.82 | 66.07 |
| OQU80131 | Sorghum | cytosol | 88.11 | 64.76 |
| KRH25929 | Soybean | cytosol | 22.95 | 64.37 |
| CDY23419 | Canola | extracellular | 77.46 | 63.0 |
| CDY01953 | Canola | cytosol | 31.97 | 54.55 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 27.05 | 53.23 |
| TraesCS7B01G166400.1 | Wheat | cytosol | 40.16 | 39.52 |
| CDX79781 | Canola | extracellular | 24.59 | 37.5 |
Protein Annotations
| Gene3D:1.10.15.30 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | ncoils:Coil | InterPro:IPR023106 | InterPro:IPR036919 |
| InterPro:L30_ferredoxin-like_sf | PFAM:PF00327 | PFAM:PF08079 | ScanProsite:PS00634 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 |
| InterPro:Ribosomal_L30_CS | InterPro:Ribosomal_L30_N | InterPro:Ribosomal_L30_central_dom_arc | InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk | InterPro:Ribosomal_L7_euk_arc |
| SUPFAM:SSF55129 | TIGRFAMs:TIGR01310 | EnsemblPlantsGene:TraesCS5B01G461300 | EnsemblPlants:TraesCS5B01G461300.1 | TIGR:cd01657 | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:637123719..637125735
Molecular Weight (calculated)
28260.8 Da
IEP (calculated)
10.646
GRAVY (calculated)
-0.549
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSEAAKVVV PESVLLKRKR EELWAAEKKT KAVEEKKKSS ENVKVIYARA KQYAEEYDAQ DKELVQLKRE ARMKGGFYVS PEAKLLFVVR IRGINAMHPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVAYGY PNLKSVRELI YKRGYGKLNK QRIPLTNNKV IEEGLGKHNI ICIEDLVHEI LTVGPHFKEA
201: NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NRENYINQLV RRMN
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVAYGY PNLKSVRELI YKRGYGKLNK QRIPLTNNKV IEEGLGKHNI ICIEDLVHEI LTVGPHFKEA
201: NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NRENYINQLV RRMN
001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
Arabidopsis Description
RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.