Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95588 | Canola | cytosol | 21.72 | 98.15 |
| OQU75637 | Sorghum | cytosol | 20.08 | 90.74 |
| AT2G01250.1 | Thale cress | cytosol | 89.75 | 90.5 |
| AT2G44120.2 | Thale cress | cytosol | 88.11 | 87.04 |
| VIT_00s2761g00010.t01 | Wine grape | cytosol | 18.03 | 86.27 |
| VIT_09s0054g00140.t01 | Wine grape | cytosol | 65.16 | 85.48 |
| KRH47287 | Soybean | nucleus | 84.84 | 85.19 |
| KRH44630 | Soybean | cytosol | 84.43 | 84.77 |
| KRH37351 | Soybean | endoplasmic reticulum | 83.61 | 84.3 |
| PGSC0003DMT400075548 | Potato | cytosol | 82.79 | 84.17 |
| VIT_11s0052g00290.t01 | Wine grape | cytosol | 84.02 | 83.67 |
| VIT_09s0054g00010.t01 | Wine grape | cytosol | 84.02 | 83.33 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 82.38 | 83.06 |
| PGSC0003DMT400051218 | Potato | cytosol | 82.38 | 83.06 |
| VIT_00s1526g00010.t01 | Wine grape | cytosol | 18.03 | 81.48 |
| PGSC0003DMT400053653 | Potato | cytosol | 81.15 | 80.82 |
| VIT_09s0054g00210.t01 | Wine grape | cytosol | 48.36 | 79.19 |
| VIT_09s0054g00060.t01 | Wine grape | cytosol | 39.34 | 78.05 |
| VIT_09s0054g00090.t01 | Wine grape | cytosol | 43.03 | 77.78 |
| Os04t0605900-01 | Rice | plastid | 77.05 | 77.05 |
| KXG24783 | Sorghum | cytosol | 77.05 | 76.73 |
| Zm00001d050193_P001 | Maize | cytosol, plasma membrane, plastid | 77.05 | 76.73 |
| OQU75620 | Sorghum | cytosol | 77.05 | 76.73 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 76.64 | 76.64 |
| HORVU2Hr1G078780.1 | Barley | cytosol | 15.98 | 76.47 |
| Os08t0234000-01 | Rice | nucleus | 76.64 | 76.33 |
| HORVU7Hr1G057320.1 | Barley | cytosol | 14.34 | 76.09 |
| Zm00001d026254_P001 | Maize | plastid | 76.64 | 76.02 |
| VIT_09s0054g00030.t01 | Wine grape | cytosol | 47.13 | 75.66 |
| TraesCS2A01G432600.1 | Wheat | cytosol, unclear | 75.41 | 75.41 |
| TraesCS5A01G452400.1 | Wheat | nucleus | 75.41 | 75.41 |
| TraesCS5B01G461300.1 | Wheat | cytosol | 75.41 | 75.41 |
| TraesCS5D01G462800.1 | Wheat | cytosol, golgi | 75.41 | 75.41 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 84.02 | 75.37 |
| Zm00001d024373_P001 | Maize | cytosol | 76.23 | 75.3 |
| TraesCS2B01G453900.1 | Wheat | cytosol, golgi, unclear | 75.0 | 75.0 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 75.41 | 74.49 |
| KXG27062 | Sorghum | cytosol | 71.31 | 74.36 |
| TraesCS2D01G430500.1 | Wheat | golgi | 73.77 | 73.77 |
| HORVU7Hr1G120140.1 | Barley | extracellular, peroxisome | 26.64 | 73.03 |
| Zm00001d030114_P001 | Maize | cytosol | 74.18 | 71.83 |
| HORVU6Hr1G079960.1 | Barley | cytosol, extracellular | 27.05 | 68.04 |
| KRH25929 | Soybean | cytosol | 23.77 | 66.67 |
| Zm00001d041838_P003 | Maize | mitochondrion | 33.2 | 64.8 |
| HORVU2Hr1G100970.4 | Barley | mitochondrion | 75.0 | 62.67 |
| VIT_00s2416g00010.t01 | Wine grape | cytosol | 19.26 | 61.04 |
| KXG27000 | Sorghum | plastid | 65.16 | 56.79 |
| OQU80131 | Sorghum | cytosol | 77.05 | 56.63 |
| VIT_09s0054g00190.t01 | Wine grape | cytosol | 29.92 | 55.3 |
| AT1G80750.1 | Thale cress | cytosol | 42.62 | 42.11 |
| GSMUA_AchrUn_... | Banana | cytosol | 9.43 | 29.11 |
| HORVU5Hr1G109020.1 | Barley | extracellular | 8.2 | 27.03 |
Protein Annotations
| Gene3D:1.10.15.30 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | EntrezGene:820560 | UniProt:A0A178VHA2 | ProteinID:AEE75376.1 |
| ProteinID:AEE75377.1 | ProteinID:AEE75378.1 | ProteinID:ANM64459.1 | ProteinID:ANM64460.1 | ProteinID:ANM64461.1 | ProteinID:ANM64462.1 |
| ProteinID:ANM64463.1 | ProteinID:ANM64464.1 | ArrayExpress:AT3G13580 | EnsemblPlantsGene:AT3G13580 | RefSeq:AT3G13580 | TAIR:AT3G13580 |
| RefSeq:AT3G13580-TAIR-G | EnsemblPlants:AT3G13580.3 | TAIR:AT3G13580.3 | EMBL:AY039900 | EMBL:AY056112 | EMBL:AY077675 |
| Unigene:At.21334 | ProteinID:BAB02600.1 | ncoils:Coil | GO:GO:0000463 | GO:GO:0002181 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0022626 |
| GO:GO:0030529 | GO:GO:0042788 | InterPro:IPR023106 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | RefSeq:NP_001326486.1 |
| RefSeq:NP_001326487.1 | RefSeq:NP_001326488.1 | RefSeq:NP_001326489.1 | RefSeq:NP_001326490.1 | RefSeq:NP_001326491.1 | RefSeq:NP_187967.1 |
| RefSeq:NP_974304.1 | RefSeq:NP_974305.1 | ProteinID:OAP05797.1 | PFAM:PF00327 | PFAM:PF08079 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00634 |
| PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | UniProt:Q9LHP1 | InterPro:Ribosomal_L30_CS | InterPro:Ribosomal_L30_N | InterPro:Ribosomal_L30_central_dom_arc |
| InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk | InterPro:Ribosomal_L7_euk_arc | SUPFAM:SSF55129 | TIGRFAMs:TIGR01310 | UniParc:UPI00000A2784 |
| SEG:seg | : | : | : | : | : |
Description
RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
Coordinates
chr3:+:4433153..4435305
Molecular Weight (calculated)
28434.9 Da
IEP (calculated)
10.616
GRAVY (calculated)
-0.648
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.