Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17884 | Canola | cytosol, extracellular | 91.9 | 93.8 |
| Bra004806.1-P | Field mustard | cytosol | 91.9 | 93.8 |
| Bra037665.1-P | Field mustard | cytosol | 91.09 | 92.98 |
| OQU75637 | Sorghum | cytosol | 20.24 | 92.59 |
| Bra000341.1-P | Field mustard | cytosol | 72.87 | 91.84 |
| CDX83440 | Canola | cytosol, extracellular | 89.47 | 90.95 |
| AT2G01250.1 | Thale cress | cytosol | 87.45 | 89.26 |
| CDY30456 | Canola | cytosol | 91.9 | 88.33 |
| AT3G13580.3 | Thale cress | cytosol | 87.04 | 88.11 |
| VIT_09s0054g00140.t01 | Wine grape | cytosol | 64.78 | 86.02 |
| PGSC0003DMT400075548 | Potato | cytosol | 82.59 | 85.0 |
| KRH47287 | Soybean | nucleus | 83.0 | 84.36 |
| VIT_00s2761g00010.t01 | Wine grape | cytosol | 17.41 | 84.31 |
| PGSC0003DMT400051218 | Potato | cytosol | 82.59 | 84.3 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 82.59 | 84.3 |
| KRH37351 | Soybean | endoplasmic reticulum | 82.59 | 84.3 |
| KRH44630 | Soybean | cytosol | 82.59 | 83.95 |
| PGSC0003DMT400053653 | Potato | cytosol | 82.19 | 82.86 |
| VIT_09s0054g00010.t01 | Wine grape | cytosol | 81.78 | 82.11 |
| VIT_11s0052g00290.t01 | Wine grape | cytosol | 81.38 | 82.04 |
| VIT_00s1526g00010.t01 | Wine grape | cytosol | 17.41 | 79.63 |
| Os04t0605900-01 | Rice | plastid | 76.52 | 77.46 |
| CDY23419 | Canola | extracellular | 93.93 | 77.33 |
| TraesCS5A01G452400.1 | Wheat | nucleus | 75.71 | 76.64 |
| TraesCS5B01G461300.1 | Wheat | cytosol | 75.71 | 76.64 |
| TraesCS5D01G462800.1 | Wheat | cytosol, golgi | 75.71 | 76.64 |
| VIT_09s0054g00210.t01 | Wine grape | cytosol | 46.15 | 76.51 |
| HORVU2Hr1G078780.1 | Barley | cytosol | 15.79 | 76.47 |
| Os08t0234000-01 | Rice | nucleus | 75.71 | 76.33 |
| HORVU7Hr1G057320.1 | Barley | cytosol | 14.17 | 76.09 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 74.9 | 75.82 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 75.71 | 75.71 |
| VIT_09s0054g00090.t01 | Wine grape | cytosol | 41.3 | 75.56 |
| KXG27062 | Sorghum | cytosol | 71.26 | 75.21 |
| Zm00001d050193_P001 | Maize | cytosol, plasma membrane, plastid | 74.49 | 75.1 |
| OQU75620 | Sorghum | cytosol | 74.49 | 75.1 |
| KXG24783 | Sorghum | cytosol | 74.49 | 75.1 |
| TraesCS2A01G432600.1 | Wheat | cytosol, unclear | 74.09 | 75.0 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 82.59 | 75.0 |
| Zm00001d026254_P001 | Maize | plastid | 74.49 | 74.8 |
| VIT_09s0054g00060.t01 | Wine grape | cytosol | 37.25 | 74.8 |
| TraesCS2B01G453900.1 | Wheat | cytosol, golgi, unclear | 73.68 | 74.59 |
| TraesCS2D01G430500.1 | Wheat | golgi | 72.87 | 73.77 |
| Zm00001d024373_P001 | Maize | cytosol | 73.28 | 73.28 |
| VIT_09s0054g00030.t01 | Wine grape | cytosol | 44.94 | 73.03 |
| HORVU7Hr1G120140.1 | Barley | extracellular, peroxisome | 25.91 | 71.91 |
| Zm00001d030114_P001 | Maize | cytosol | 72.47 | 71.03 |
| KRH25929 | Soybean | cytosol | 23.89 | 67.82 |
| HORVU6Hr1G079960.1 | Barley | cytosol, extracellular | 26.32 | 67.01 |
| Zm00001d041838_P003 | Maize | mitochondrion | 32.79 | 64.8 |
| CDY01953 | Canola | cytosol | 37.25 | 64.34 |
| HORVU2Hr1G100970.4 | Barley | mitochondrion | 73.68 | 62.33 |
| VIT_00s2416g00010.t01 | Wine grape | cytosol | 19.03 | 61.04 |
| KXG27000 | Sorghum | plastid | 64.78 | 57.14 |
| OQU80131 | Sorghum | cytosol | 74.49 | 55.42 |
| VIT_09s0054g00190.t01 | Wine grape | cytosol | 28.34 | 53.03 |
| CDX79781 | Canola | extracellular | 32.79 | 50.62 |
| AT1G80750.1 | Thale cress | cytosol | 41.7 | 41.7 |
| GSMUA_AchrUn_... | Banana | cytosol | 9.72 | 30.38 |
| HORVU5Hr1G109020.1 | Barley | extracellular | 8.1 | 27.03 |
Protein Annotations
| Gene3D:1.10.15.30 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | EntrezGene:819018 | ProteinID:AEC10379.1 | ArrayExpress:AT2G44120 |
| EnsemblPlantsGene:AT2G44120 | RefSeq:AT2G44120 | TAIR:AT2G44120 | RefSeq:AT2G44120-TAIR-G | EnsemblPlants:AT2G44120.2 | TAIR:AT2G44120.2 |
| ncoils:Coil | UniProt:F4IT48 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0022625 | GO:GO:0022626 |
| GO:GO:0042788 | InterPro:IPR023106 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | RefSeq:NP_850411.1 | PFAM:PF00327 |
| PFAM:PF08079 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00634 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | InterPro:Ribosomal_L30_CS | InterPro:Ribosomal_L30_N |
| InterPro:Ribosomal_L30_central_dom_arc | InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk | InterPro:Ribosomal_L7_euk_arc | SUPFAM:SSF55129 | TIGRFAMs:TIGR01310 |
| UniParc:UPI0000134192 | SEG:seg | : | : | : | : |
Description
Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
Coordinates
chr2:-:18249042..18250779
Molecular Weight (calculated)
28521.2 Da
IEP (calculated)
10.501
GRAVY (calculated)
-0.446
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVGEMAESK VVVPESVLKK IKRQEEWALA KKDEAVAAKK KSVEARKLIF KRAEQYAKEY AEKDNELIRL KREAKLKGGF YVDPEAKLLF IIRIRGINAI
101: DPKTKKILQL LRLRQIFNGV FLKVNKATVN MLRRVEPYVT YGYPNLKSVK ELIYKRGYGK LNHQRIALTD NSIVDQALGK HGIICVEDLI HEIMTVGPHF
201: KEANNFLWPF QLKAPLGGLK KKRNHYVEGG DAGNRENFIN ELVRRMN
101: DPKTKKILQL LRLRQIFNGV FLKVNKATVN MLRRVEPYVT YGYPNLKSVK ELIYKRGYGK LNHQRIALTD NSIVDQALGK HGIICVEDLI HEIMTVGPHF
201: KEANNFLWPF QLKAPLGGLK KKRNHYVEGG DAGNRENFIN ELVRRMN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.