CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01953	Canola	cytosol	50.62	56.64
VIT_00s2761g00010.t01	Wine grape	cytosol	16.88	52.94
VIT_00s1526g00010.t01	Wine grape	cytosol	16.88	50.0
HORVU2Hr1G078780.1	Barley	cytosol	15.62	49.02
VIT_09s0054g00060.t01	Wine grape	cytosol	31.25	40.65
Bra004806.1-P	Field mustard	cytosol	56.88	37.6
CDY17884	Canola	cytosol, extracellular	56.88	37.6
VIT_09s0054g00190.t01	Wine grape	cytosol	30.0	36.36
VIT_09s0054g00090.t01	Wine grape	cytosol	30.62	36.3
CDY30456	Canola	cytosol	56.88	35.41
VIT_00s2416g00010.t01	Wine grape	cytosol	16.88	35.06
CDX83440	Canola	cytosol, extracellular	53.12	34.98
VIT_09s0054g00210.t01	Wine grape	cytosol	31.88	34.23
CDY17686	Canola	cytosol	50.0	33.06
CDX77810	Canola	cytosol, extracellular	50.0	33.06
CDY40393	Canola	cytosol	50.0	33.06
AT2G44120.2	Thale cress	cytosol	50.62	32.79
CDY41074	Canola	cytosol	49.38	32.64
CDY37358	Canola	cytosol	49.38	32.64
CDY25941	Canola	cytosol	49.38	32.64
PGSC0003DMT400051218	Potato	cytosol	46.88	30.99
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	46.88	30.99
VIT_09s0054g00030.t01	Wine grape	cytosol	29.38	30.92
KRH47287	Soybean	nucleus	46.25	30.45
KRH44630	Soybean	cytosol	44.38	29.22
PGSC0003DMT400075548	Potato	cytosol	43.75	29.17
KRH37351	Soybean	endoplasmic reticulum	43.75	28.93
CDY23419	Canola	extracellular	53.12	28.33
PGSC0003DMT400053653	Potato	cytosol	43.12	28.16
GSMUA_AchrUn_...	Banana	cytosol	13.75	27.85
VIT_11s0052g00290.t01	Wine grape	cytosol	42.5	27.76
VIT_09s0054g00010.t01	Wine grape	cytosol	42.5	27.64
KRH12348	Soybean	endoplasmic reticulum, nucleus	46.25	27.21
HORVU5Hr1G108990.2	Barley	cytosol	40.0	25.91
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	14.38	25.84
Zm00001d026254_P001	Maize	plastid	39.38	25.61
Zm00001d002395_P002	Maize	cytosol, extracellular	38.75	25.41
Os04t0605900-01	Rice	plastid	38.12	25.0
Zm00001d030114_P001	Maize	cytosol	39.38	25.0
OQU75620	Sorghum	cytosol	38.12	24.9
Os08t0234000-01	Rice	nucleus	38.12	24.9
KXG24783	Sorghum	cytosol	38.12	24.9
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	15.0	24.74
TraesCS5B01G461300.1	Wheat	cytosol	37.5	24.59
TraesCS5A01G452400.1	Wheat	nucleus	37.5	24.59
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	37.5	24.49
TraesCS5D01G462800.1	Wheat	cytosol, golgi	36.88	24.18
TraesCS2A01G432600.1	Wheat	cytosol, unclear	36.25	23.77
Zm00001d024373_P001	Maize	cytosol	36.25	23.48
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	35.62	23.36
TraesCS2D01G430500.1	Wheat	golgi	35.62	23.36
KXG27062	Sorghum	cytosol	33.75	23.08
HORVU2Hr1G100970.4	Barley	mitochondrion	38.75	21.23
KXG27000	Sorghum	plastid	35.0	20.0
OQU80131	Sorghum	cytosol	40.0	19.28
CDX67964	Canola	cytosol	19.38	17.32
VIT_09s0054g00140.t01	Wine grape	cytosol	16.25	13.98
CDX67965	Canola	cytosol	19.38	11.74
CDX79356	Canola	cytosol	18.75	11.67
CDY66947	Canola	cytosol	18.75	11.41
CDY53223	Canola	cytosol	18.75	11.41
Zm00001d041838_P003	Maize	mitochondrion	1.88	2.4
HORVU7Hr1G057320.1	Barley	cytosol	0.62	2.17
HORVU5Hr1G109020.1	Barley	extracellular	0.0	0.0
CDX95588	Canola	cytosol	0.0	0.0
KRH25929	Soybean	cytosol	0.0	0.0
OQU75637	Sorghum	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX79781	EnsemblPlantsGene:GSBRNA2T00132609001	InterPro:Ribosomal_L30_N	ncoils:Coil	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16
PFAM:PF08079	ProteinID:CDX79781	ProteinID:CDX79781.1	SEG:seg	UniParc:UPI0004EEA456	MapMan:35.1

Description

BnaA05g03750D

Coordinates

chrLK031819:+:143962..145277

Molecular Weight (calculated)

18310.6 Da

IEP (calculated)

10.516

GRAVY (calculated)

-0.414

Length

160 amino acids

Sequence
(BLAST)

001: MGTKEVAKHL SYKRLSSFLL YGLTIKTLKP ILIHSSSSSS LRRALYLTCS QREMAESKVV VPESVLKKIK REEEWALAKK QEAAAAKKKS VENRKLIFKR
101: AEQYAKEYAE KDNELIRLKR EAKLKGGFYV DPEAKLLFII RIRGYVGCSC GQSKCTVHRL

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.