CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	KRG91803	AT4G09570.1	19130088
AT2G01250.1	KRH34983	AT4G09570.1	19130088
AT2G01250.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75637	Sorghum	cytosol	20.66	92.59
CDX95588	Canola	cytosol	19.83	88.89
KRH47287	Soybean	nucleus	87.6	87.24
KRH44630	Soybean	cytosol	87.19	86.83
KRH12348	Soybean	endoplasmic reticulum, nucleus	97.52	86.76
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	85.95	85.95
PGSC0003DMT400051218	Potato	cytosol	85.95	85.95
AT2G01250.1	Thale cress	cytosol	85.95	85.95
Bra037665.1-P	Field mustard	cytosol	83.88	83.88
Bra004806.1-P	Field mustard	cytosol	83.88	83.88
CDY17884	Canola	cytosol, extracellular	83.88	83.88
AT3G13580.3	Thale cress	cytosol	84.3	83.61
CDX77810	Canola	cytosol, extracellular	83.47	83.47
Bra014334.1-P	Field mustard	cytosol	83.47	83.47
CDY40393	Canola	cytosol	83.47	83.47
CDY37358	Canola	cytosol	83.47	83.47
CDY25941	Canola	cytosol	83.47	83.47
CDY17686	Canola	cytosol	83.47	83.47
Bra017461.1-P	Field mustard	cytosol	83.47	83.47
Bra024895.1-P	Field mustard	cytosol	83.47	83.47
CDY41074	Canola	cytosol	83.06	83.06
PGSC0003DMT400075548	Potato	cytosol	82.23	82.92
AT2G44120.2	Thale cress	cytosol	84.3	82.59
CDX83440	Canola	cytosol, extracellular	82.64	82.3
PGSC0003DMT400053653	Potato	cytosol	83.06	82.04
Bra000341.1-P	Field mustard	cytosol	66.12	81.63
CDY30456	Canola	cytosol	84.71	79.77
Os08t0234000-01	Rice	nucleus	78.93	77.96
Zm00001d002395_P002	Maize	cytosol, extracellular	78.1	77.46
KXG27062	Sorghum	cytosol	74.79	77.35
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	78.1	77.14
OQU75620	Sorghum	cytosol	78.1	77.14
KXG24783	Sorghum	cytosol	78.1	77.14
HORVU2Hr1G078780.1	Barley	cytosol	16.12	76.47
Zm00001d026254_P001	Maize	plastid	77.69	76.42
Os04t0605900-01	Rice	plastid	76.86	76.23
Zm00001d024373_P001	Maize	cytosol	77.27	75.71
TraesCS5D01G462800.1	Wheat	cytosol, golgi	76.03	75.41
TraesCS5B01G461300.1	Wheat	cytosol	76.03	75.41
TraesCS5A01G452400.1	Wheat	nucleus	76.03	75.41
HORVU5Hr1G108990.2	Barley	cytosol	76.86	75.3
TraesCS2A01G432600.1	Wheat	cytosol, unclear	75.62	75.0
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	75.21	74.59
TraesCS2D01G430500.1	Wheat	golgi	74.79	74.18
HORVU7Hr1G057320.1	Barley	cytosol	14.05	73.91
Zm00001d030114_P001	Maize	cytosol	75.21	72.22
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	26.03	70.79
KRH25929	Soybean	cytosol	25.21	70.11
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	26.86	67.01
CDY23419	Canola	extracellular	83.06	67.0
Zm00001d041838_P003	Maize	mitochondrion	33.06	64.0
HORVU2Hr1G100970.4	Barley	mitochondrion	74.79	61.99
CDY01953	Canola	cytosol	35.12	59.44
KXG27000	Sorghum	plastid	66.53	57.5
OQU80131	Sorghum	cytosol	78.1	56.93
KRG94901	Soybean	nucleus	45.45	46.61
KRH06635	Soybean	cytosol	44.63	45.76
CDX79781	Canola	extracellular	28.93	43.75
HORVU5Hr1G109020.1	Barley	extracellular	7.85	25.68

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:100306213	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	EMBL:ACUP02005440	ncoils:Coil
EnsemblPlantsGene:GLYMA_09G061000	GO:GO:0000463	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:I1L1F3
InterPro:IPR023106	InterPro:IPR036919	EnsemblPlants:KRH37351	ProteinID:KRH37351	ProteinID:KRH37351.1	InterPro:L30_ferredoxin-like_sf
PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS
InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129
TIGRFAMs:TIGR01310	UniParc:UPI00023CA56F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:5717496..5720193

Molecular Weight (calculated)

28322.8 Da

IEP (calculated)

10.454

GRAVY (calculated)

-0.648

Length

242 amino acids

Sequence
(BLAST)

001: MGEAKALVPE SVVKKEKRNE EWALEKKQEL DAAKKKRFET RKLIFNRAKQ YSKEYDEQQK ELIRLKREAK LKGGFYVEPE AKLLFIIRIR GINAMDPKTR
101: KILQLLRLRQ IFNGVFLKVN KATVNMLHRV EPYVTYGYPN LKSVKELIYK RGYGKVNKQR IALNDNSIVE QTLGKHGIIC VEDLIHEILT VGPHFKEANN
201: FLWPFKLKAP LGGLEKKRNH YVEGGDAGNR EDYINELIRR MN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.