CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	EES09373	AT4G09570.1	19130088
AT2G01250.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75637	Sorghum	cytosol	21.37	92.59
Zm00001d002395_P002	Maize	cytosol, extracellular	94.44	90.57
Os04t0605900-01	Rice	plastid	91.03	87.3
OQU75620	Sorghum	cytosol	90.6	86.53
KXG24783	Sorghum	cytosol	90.6	86.53
CDX95588	Canola	cytosol	19.66	85.19
TraesCS5B01G461300.1	Wheat	cytosol	88.46	84.84
TraesCS5A01G452400.1	Wheat	nucleus	88.46	84.84
TraesCS5D01G462800.1	Wheat	cytosol, golgi	88.03	84.43
HORVU5Hr1G108990.2	Barley	cytosol	88.46	83.81
TraesCS2D01G430500.1	Wheat	golgi	85.9	82.38
TraesCS2A01G432600.1	Wheat	cytosol, unclear	85.9	82.38
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	85.47	81.97
HORVU2Hr1G078780.1	Barley	cytosol	17.52	80.39
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	29.91	78.65
GSMUA_Achr4P05780_001	Banana	cytosol	80.77	77.46
GSMUA_Achr11P...	Banana	cytosol	80.77	77.46
GSMUA_Achr10P...	Banana	cytosol	80.77	77.46
KRH44630	Soybean	cytosol	78.21	75.31
KRH47287	Soybean	nucleus	77.78	74.9
KRH37351	Soybean	endoplasmic reticulum	77.35	74.79
PGSC0003DMT400075548	Potato	cytosol	75.64	73.75
CDY17884	Canola	cytosol, extracellular	76.07	73.55
Bra004806.1-P	Field mustard	cytosol	76.07	73.55
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	30.34	73.2
PGSC0003DMT400051218	Potato	cytosol	75.64	73.14
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	75.64	73.14
PGSC0003DMT400053653	Potato	cytosol	76.5	73.06
CDX83440	Canola	cytosol, extracellular	75.64	72.84
Bra037665.1-P	Field mustard	cytosol	75.21	72.73
AT2G01250.1	Thale cress	cytosol	75.21	72.73
Bra017461.1-P	Field mustard	cytosol	74.36	71.9
CDY37358	Canola	cytosol	74.36	71.9
CDX77810	Canola	cytosol, extracellular	73.93	71.49
CDY25941	Canola	cytosol	73.93	71.49
CDY40393	Canola	cytosol	73.93	71.49
Bra014334.1-P	Field mustard	cytosol	73.93	71.49
CDY17686	Canola	cytosol	73.93	71.49
CDY41074	Canola	cytosol	73.93	71.49
AT3G13580.3	Thale cress	cytosol	74.36	71.31
AT2G44120.2	Thale cress	cytosol	75.21	71.26
Bra000341.1-P	Field mustard	cytosol	59.4	70.92
Bra024895.1-P	Field mustard	cytosol	73.08	70.66
CDY30456	Canola	cytosol	76.07	69.26
KXG27000	Sorghum	plastid	81.2	67.86
HORVU2Hr1G100970.4	Barley	mitochondrion	84.19	67.47
KRH12348	Soybean	endoplasmic reticulum, nucleus	77.78	66.91
GSMUA_Achr4P12660_001	Banana	cytosol	79.91	64.48
OQU80131	Sorghum	cytosol	90.6	63.86
KRH25929	Soybean	cytosol	23.5	63.22
CDY23419	Canola	extracellular	76.07	59.33
CDY01953	Canola	cytosol	29.91	48.95
EES15262	Sorghum	cytosol	41.03	36.64
CDX79781	Canola	extracellular	23.08	33.75

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:A0A1B6PN14	ncoils:Coil	GO:GO:0000463
GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023106	InterPro:IPR036919	EnsemblPlants:KXG27062
ProteinID:KXG27062	ProteinID:KXG27062.1	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634
PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like
InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	EnsemblPlantsGene:SORBI_3006G206900	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI00081AD7D6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:55660220..55662122

Molecular Weight (calculated)

27150.4 Da

IEP (calculated)

10.432

GRAVY (calculated)

-0.463

Length

234 amino acids

Sequence
(BLAST)

001: MSSEAAKVAV PESWAAEKKE KALAEKKKKS IESRKLIFTR AKQYAEEYDA QEKELVQLKR EALLKGGFYV TPEANLLFVV RIRGINAMHL KTRKILQLLR
101: LRQIFNGVFL KVNKATINML RRVEPYVAYG YPNLKSVREL IYKRGYGKLN KQRIPLSNNQ VIEEGLGKHN IICIEDLVHE IMTVGPHFKE ANNFLWPFKL
201: KAPLGGLKKW NQYVEGGDAY NRENYINELI KRMN

Best Arabidopsis Sequence Match ( AT2G44120.1 )
(BLAST)

001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN

Arabidopsis Description

Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.