CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	CDX90725	AT4G09570.1	19130088
AT2G01250.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17686	Canola	cytosol	100.0	100.0
CDY40393	Canola	cytosol	99.59	99.59
CDY37358	Canola	cytosol	99.59	99.59
Bra024895.1-P	Field mustard	cytosol	99.17	99.17
CDY25941	Canola	cytosol	98.35	98.35
CDY41074	Canola	cytosol	97.93	97.93
CDX95588	Canola	cytosol	21.49	96.3
AT2G01250.1	Thale cress	cytosol	96.28	96.28
OQU75637	Sorghum	cytosol	20.66	92.59
CDY17884	Canola	cytosol, extracellular	91.32	91.32
CDX83440	Canola	cytosol, extracellular	88.43	88.07
VIT_09s0054g00140.t01	Wine grape	cytosol	66.53	86.56
KRH47287	Soybean	nucleus	86.78	86.42
KRH44630	Soybean	cytosol	86.36	86.01
CDY30456	Canola	cytosol	91.32	85.99
PGSC0003DMT400051218	Potato	cytosol	84.71	84.71
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	84.71	84.71
VIT_11s0052g00290.t01	Wine grape	cytosol	85.54	84.49
VIT_00s2761g00010.t01	Wine grape	cytosol	17.77	84.31
PGSC0003DMT400075548	Potato	cytosol	83.47	84.17
VIT_09s0054g00010.t01	Wine grape	cytosol	85.54	84.15
KRH37351	Soybean	endoplasmic reticulum	83.47	83.47
PGSC0003DMT400053653	Potato	cytosol	82.23	81.22
VIT_09s0054g00210.t01	Wine grape	cytosol	49.17	79.87
VIT_00s1526g00010.t01	Wine grape	cytosol	17.77	79.63
CDY01953	Canola	cytosol	46.28	78.32
VIT_09s0054g00060.t01	Wine grape	cytosol	39.67	78.05
VIT_09s0054g00090.t01	Wine grape	cytosol	43.39	77.78
Os04t0605900-01	Rice	plastid	77.27	76.64
HORVU2Hr1G078780.1	Barley	cytosol	16.12	76.47
VIT_09s0054g00030.t01	Wine grape	cytosol	47.93	76.32
TraesCS5A01G452400.1	Wheat	nucleus	76.86	76.23
Zm00001d002395_P002	Maize	cytosol, extracellular	76.86	76.23
TraesCS5B01G461300.1	Wheat	cytosol	76.86	76.23
HORVU7Hr1G057320.1	Barley	cytosol	14.46	76.09
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	76.86	75.92
OQU75620	Sorghum	cytosol	76.86	75.92
KXG24783	Sorghum	cytosol	76.86	75.92
TraesCS2A01G432600.1	Wheat	cytosol, unclear	76.45	75.82
TraesCS5D01G462800.1	Wheat	cytosol, golgi	76.45	75.82
Zm00001d026254_P001	Maize	plastid	76.86	75.61
Os08t0234000-01	Rice	nucleus	76.45	75.51
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	76.03	75.41
TraesCS2D01G430500.1	Wheat	golgi	75.62	75.0
Zm00001d024373_P001	Maize	cytosol	76.45	74.9
HORVU5Hr1G108990.2	Barley	cytosol	76.03	74.49
KXG27062	Sorghum	cytosol	71.49	73.93
KRH12348	Soybean	endoplasmic reticulum, nucleus	83.06	73.9
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	26.45	71.91
Zm00001d030114_P001	Maize	cytosol	73.97	71.03
CDY23419	Canola	extracellular	88.02	71.0
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	26.86	67.01
KRH25929	Soybean	cytosol	23.97	66.67
HORVU2Hr1G100970.4	Barley	mitochondrion	75.62	62.67
Zm00001d041838_P003	Maize	mitochondrion	32.23	62.4
VIT_00s2416g00010.t01	Wine grape	cytosol	19.01	59.74
KXG27000	Sorghum	plastid	65.7	56.79
OQU80131	Sorghum	cytosol	76.86	56.02
VIT_09s0054g00190.t01	Wine grape	cytosol	29.75	54.55
CDX79781	Canola	extracellular	33.06	50.0
CDX79356	Canola	cytosol	43.39	40.86
CDY53223	Canola	cytosol	43.39	39.92
CDY66947	Canola	cytosol	43.39	39.92
CDX67965	Canola	cytosol	42.98	39.39
CDX67964	Canola	cytosol	23.14	31.28
GSMUA_AchrUn_...	Banana	cytosol	9.92	30.38
HORVU5Hr1G109020.1	Barley	extracellular	8.68	28.38

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	GO:A0A078CLL9	UniProt:A0A078CLL9	EnsemblPlants:CDX77810
ProteinID:CDX77810	ProteinID:CDX77810.1	ProteinID:CDY17686.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00128857001	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524
PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk
InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0001BA86A3	SEG:seg	:

Description

BnaC07g20640DBnaA06g35050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CLL9]

Coordinates

chrLK031812:-:1985329..1986722

Molecular Weight (calculated)

27932.4 Da

IEP (calculated)

10.627

GRAVY (calculated)

-0.533

Length

242 amino acids

Sequence
(BLAST)

001: MAESKVVVPE SVLKKRKREE EWALAKKQSA EAAKKTNAAN RKLIYKRAEQ YAKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR VALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.