Factsheet for TraesCS5A01G452400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT2G01250.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT2G01250.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G461300.1	Wheat	cytosol	100.0	100.0
TraesCS5D01G462800.1	Wheat	cytosol, golgi	99.18	99.18
HORVU5Hr1G108990.2	Barley	cytosol	97.95	96.76
TraesCS2A01G432600.1	Wheat	cytosol, unclear	93.44	93.44
CDX95588	Canola	cytosol	20.49	92.59
Os04t0605900-01	Rice	plastid	91.39	91.39
Zm00001d002395_P002	Maize	cytosol, extracellular	90.16	90.16
Zm00001d026254_P001	Maize	plastid	90.16	89.43
KXG27062	Sorghum	cytosol	84.84	88.46
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	88.11	87.76
OQU75620	Sorghum	cytosol	88.11	87.76
KXG24783	Sorghum	cytosol	88.11	87.76
Zm00001d024373_P001	Maize	cytosol	87.7	86.64
Zm00001d030114_P001	Maize	cytosol	86.48	83.73
GSMUA_Achr4P05780_001	Banana	cytosol	83.2	83.2
GSMUA_Achr11P...	Banana	cytosol	81.97	81.97
GSMUA_Achr10P...	Banana	cytosol	81.15	81.15
PGSC0003DMT400075548	Potato	cytosol	77.46	78.75
CDY17884	Canola	cytosol, extracellular	77.87	78.51
Bra004806.1-P	Field mustard	cytosol	77.87	78.51
KRH47287	Soybean	nucleus	77.87	78.19
KRH44630	Soybean	cytosol	77.87	78.19
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	77.46	78.1
PGSC0003DMT400051218	Potato	cytosol	77.46	78.1
VIT_09s0054g00150.t01	Wine grape	cytosol	27.87	77.27
Bra017461.1-P	Field mustard	cytosol	76.64	77.27
Bra037665.1-P	Field mustard	cytosol	76.64	77.27
AT2G01250.1	Thale cress	cytosol	76.64	77.27
PGSC0003DMT400053653	Potato	cytosol	77.46	77.14
CDX83440	Canola	cytosol, extracellular	76.64	76.95
Bra014334.1-P	Field mustard	cytosol	76.23	76.86
CDX77810	Canola	cytosol, extracellular	76.23	76.86
CDY17686	Canola	cytosol	76.23	76.86
CDY41074	Canola	cytosol	76.23	76.86
CDY40393	Canola	cytosol	76.23	76.86
CDY25941	Canola	cytosol	76.23	76.86
CDY37358	Canola	cytosol	75.82	76.45
KRH37351	Soybean	endoplasmic reticulum	75.41	76.03
Bra024895.1-P	Field mustard	cytosol	75.41	76.03
Bra000341.1-P	Field mustard	cytosol	61.07	76.02
AT2G44120.2	Thale cress	cytosol	76.64	75.71
AT3G13580.3	Thale cress	cytosol	75.41	75.41
CDY30456	Canola	cytosol	77.46	73.54
GSMUA_Achr4P12660_001	Banana	cytosol	80.74	67.93
KRH12348	Soybean	endoplasmic reticulum, nucleus	75.41	67.65
KXG27000	Sorghum	plastid	75.82	66.07
OQU80131	Sorghum	cytosol	88.11	64.76
KRH25929	Soybean	cytosol	22.95	64.37
CDY23419	Canola	extracellular	77.46	63.0
CDY01953	Canola	cytosol	31.97	54.55
VIT_09s0054g00070.t01	Wine grape	extracellular	27.05	53.23
TraesCS7A01G266000.1	Wheat	nucleus	40.57	39.92
CDX79781	Canola	extracellular	24.59	37.5

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ncoils:Coil	InterPro:IPR023106	InterPro:IPR036919
InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16
InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGRFAMs:TIGR01310	EnsemblPlantsGene:TraesCS5A01G452400	EnsemblPlants:TraesCS5A01G452400.1	TIGR:cd01657	SEG:seg

Description

No Description!

Coordinates

chr5A:-:634058934..634060846

Molecular Weight (calculated)

28260.8 Da

IEP (calculated)

10.646

GRAVY (calculated)

-0.549

Length

244 amino acids

Sequence
(BLAST)

001: MSSEAAKVVV PESVLLKRKR EELWAAEKKT KAVEEKKKSS ENVKVIYARA KQYAEEYDAQ DKELVQLKRE ARMKGGFYVS PEAKLLFVVR IRGINAMHPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVAYGY PNLKSVRELI YKRGYGKLNK QRIPLTNNKV IEEGLGKHNI ICIEDLVHEI LTVGPHFKEA
201: NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NRENYINQLV RRMN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.