Factsheet for TraesCS7A01G266000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G166400.1	Wheat	cytosol	98.39	98.39
TraesCS7D01G268700.1	Wheat	cytosol	97.98	97.98
Os08t0542100-01	Rice	nucleus	81.45	73.45
TraesCS1D01G134300.1	Wheat	cytosol	66.94	68.88
EES15262	Sorghum	cytosol	72.18	68.32
Zm00001d031703_P001	Maize	cytosol, plasma membrane	71.77	67.94
Zm00001d052719_P002	Maize	cytosol	68.95	65.27
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	45.56	63.48
VIT_09s0070g00130.t01	Wine grape	cytosol	51.61	52.03
Solyc06g068400.2.1	Tomato	cytosol, nucleus	51.61	52.03
PGSC0003DMT400073431	Potato	cytosol	51.21	51.63
PGSC0003DMT400036807	Potato	cytosol	50.0	50.41
AT1G80750.1	Thale cress	cytosol	47.58	47.77
CDX79356	Canola	cytosol	47.58	45.91
KRH06635	Soybean	cytosol	43.55	45.76
KRG94901	Soybean	nucleus	43.15	45.34
CDY66947	Canola	cytosol	46.37	43.73
Bra008443.1-P	Field mustard	cytosol	45.97	43.35
CDY53223	Canola	cytosol	45.97	43.35
CDX67965	Canola	cytosol	45.97	43.18
Bra003583.1-P	Field mustard	cytosol	45.97	43.18
Solyc03g117060.2.1	Tomato	nucleus	50.81	42.0
TraesCS2A01G432600.1	Wheat	cytosol, unclear	40.32	40.98
TraesCS5A01G452400.1	Wheat	nucleus	39.92	40.57
CDX67964	Canola	cytosol	24.6	34.08

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0022625	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf
PFAM:PF00327	PFAM:PF08079	PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc
InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	EnsemblPlantsGene:TraesCS7A01G266000
EnsemblPlants:TraesCS7A01G266000.1	TIGR:cd01657	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7A:-:267569303..267570629

Molecular Weight (calculated)

28745.3 Da

IEP (calculated)

10.801

GRAVY (calculated)

-0.671

Length

248 amino acids

Sequence
(BLAST)

001: MAEEEGTQQL PFVRETVLKK RKDNEEWATK NRERKAAKRQ RRRHDAKGAI KRPEDFVKEF RNKELDFLRM RMRLKVRKLR PAEAIDAKLL FAIRIPGTAD
101: LHPQIRKILA RLRLTQVLTG VFLKATEANL KRLAAVGPFV TYGFPNLKNV KELIYKKGRG YFDKEPFPLT SNDLIEKALG EHGVICLEDV VHEISTVGPH
201: FRETASFLMP FKLKCPERRL QMKKKPFKDG GDSGNRGDKI NELLEKLN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.