Factsheet for PGSC0003DMT400036807

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073431	Potato	cytosol	86.59	86.59
Solyc03g117060.2.1	Tomato	nucleus	95.94	78.67
VIT_09s0070g00130.t01	Wine grape	cytosol	64.23	64.23
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	43.9	60.67
KRH06635	Soybean	cytosol	56.91	59.32
KRG94901	Soybean	nucleus	56.1	58.47
CDX79356	Canola	cytosol	55.28	52.92
AT1G80750.1	Thale cress	cytosol	52.85	52.63
TraesCS7B01G166400.1	Wheat	cytosol	51.22	50.81
CDY66947	Canola	cytosol	53.66	50.19
CDX67965	Canola	cytosol	53.66	50.0
TraesCS7A01G266000.1	Wheat	nucleus	50.41	50.0
Bra003583.1-P	Field mustard	cytosol	53.66	50.0
Bra008443.1-P	Field mustard	cytosol	53.25	49.81
TraesCS7D01G268700.1	Wheat	cytosol	50.0	49.6
CDY53223	Canola	cytosol	52.85	49.43
PGSC0003DMT400051218	Potato	cytosol	46.75	47.52
Os08t0542100-01	Rice	nucleus	52.44	46.91
EES15262	Sorghum	cytosol	49.19	46.18
PGSC0003DMT400075548	Potato	cytosol	44.72	45.83
Zm00001d052719_P002	Maize	cytosol	48.78	45.8
PGSC0003DMT400053653	Potato	cytosol	44.72	44.9
Zm00001d031703_P001	Maize	cytosol, plasma membrane	47.56	44.66
CDX67964	Canola	cytosol	30.89	42.46
TraesCS1D01G134300.1	Wheat	cytosol	34.55	35.27

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:102600208	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	InterPro:IPR023106	InterPro:IPR036919
InterPro:L30_ferredoxin-like_sf	UniProt:M1B492	PFAM:PF00327	PFAM:PF08079	EnsemblPlantsGene:PGSC0003DMG400014191	PGSC:PGSC0003DMG400014191
EnsemblPlants:PGSC0003DMT400036807	PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like
InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI000295EC76	RefSeq:XP_006341364.1
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L7 [Source:PGSC_GENE;Acc:PGSC0003DMG400014191]

Coordinates

chr3:-:56863696..56867940

Molecular Weight (calculated)

28489.0 Da

IEP (calculated)

10.476

GRAVY (calculated)

-0.576

Length

246 amino acids

Sequence
(BLAST)

001: MAEEMPQPLN YIPEVILKKR KNNEEWAIRR KLQLEQKVKK LKSDNFVIKK PEQFIREYRD KEMDLVQMKQ RGKNRSRRAF VTSDSSLLFV IRIGGKSDMH
101: PRTRKLLYSL RLRKIFNGVF VKADARILEI LQKVEPFVTY GYPNLKSIKD LIYKKGAGKI DNQRVPLTSN EVVEQALGQN GILCLEDVVT EIANIGPHFK
201: EVTTFLCPFA LTKPEKALQG KKKRFLDGGD SGNREDHINE LVSKMN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.