CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53223	Canola	cytosol	98.86	98.86
Bra008443.1-P	Field mustard	cytosol	98.1	98.1
CDX79356	Canola	cytosol	86.31	88.33
CDX67965	Canola	cytosol	88.59	88.26
AT1G80750.1	Thale cress	cytosol	80.61	85.83
CDX67964	Canola	cytosol	51.71	75.98
VIT_09s0070g00130.t01	Wine grape	cytosol	53.99	57.72
KRH06635	Soybean	cytosol	51.71	57.63
KRG94901	Soybean	nucleus	51.33	57.2
PGSC0003DMT400073431	Potato	cytosol	50.95	54.47
Solyc06g068400.2.1	Tomato	cytosol, nucleus	50.57	54.06
PGSC0003DMT400036807	Potato	cytosol	50.19	53.66
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	36.12	53.37
TraesCS7A01G266000.1	Wheat	nucleus	43.73	46.37
TraesCS7B01G166400.1	Wheat	cytosol	43.73	46.37
TraesCS7D01G268700.1	Wheat	cytosol	43.35	45.97
Solyc03g117060.2.1	Tomato	nucleus	51.33	45.0
Os08t0542100-01	Rice	nucleus	46.39	44.36
CDY25941	Canola	cytosol	39.92	43.39
CDY37358	Canola	cytosol	39.92	43.39
CDY40393	Canola	cytosol	39.92	43.39
CDY17686	Canola	cytosol	39.92	43.39
CDX77810	Canola	cytosol, extracellular	39.92	43.39
CDX95588	Canola	cytosol	8.75	42.59
CDY41074	Canola	cytosol	39.16	42.56
EES15262	Sorghum	cytosol	42.21	42.37
Zm00001d031703_P001	Maize	cytosol, plasma membrane	41.83	41.98
Zm00001d052719_P002	Maize	cytosol	41.83	41.98
CDY17884	Canola	cytosol, extracellular	37.64	40.91
CDX83440	Canola	cytosol, extracellular	36.88	39.92
CDY30456	Canola	cytosol	38.4	39.3
TraesCS1D01G134300.1	Wheat	cytosol	30.8	33.61
CDY23419	Canola	extracellular	37.26	32.67
CDY01953	Canola	cytosol	15.97	29.37
CDX79781	Canola	extracellular	11.41	18.75

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:A0A078JNK1	EnsemblPlants:CDY66947	ProteinID:CDY66947
ProteinID:CDY66947.1	EnsemblPlantsGene:GSBRNA2T00057703001	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327
PFAM:PF08079	PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like
InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0004EF2E6E	SEG:seg

Description

BnaA02g36270DBnaA02g36270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNK1]

Coordinates

chrLK035611:+:520..2131

Molecular Weight (calculated)

29981.9 Da

IEP (calculated)

10.326

GRAVY (calculated)

-0.472

Length

263 amino acids

Sequence
(BLAST)

001: MAEEEAKVMA VEEPKLMAVE EPKGLDYIPE VILKKRKNRD ELAFIRKKQL ELGNFGKKKK KVADIKRPED FVLEFRAKEV DLIRMKQRVK RPKSSPAPIN
101: SNLVFIIRIQ GKNDMHPKTK KVLNSMQLRS TFTGVFAKAT DGLFQKLLKV QPYVTYGYPS DKSVKDLIFK KGYTIIEGNP VPLTDNNIIE QALGEHGIFC
201: IEDLVNEISR VGVHFREVMR FLGPLKLNKP EAGVLRGKKQ VFSDGGDTGN REDKINDLII KMN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.