CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06635	Soybean	cytosol	96.19	96.19
VIT_09s0070g00130.t01	Wine grape	cytosol	61.44	58.94
PGSC0003DMT400036807	Potato	cytosol	58.47	56.1
PGSC0003DMT400073431	Potato	cytosol	58.05	55.69
Solyc06g068400.2.1	Tomato	cytosol, nucleus	58.05	55.69
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	40.25	53.37
CDX79356	Canola	cytosol	57.63	52.92
AT1G80750.1	Thale cress	cytosol	55.08	52.63
CDY66947	Canola	cytosol	57.2	51.33
CDY53223	Canola	cytosol	56.78	50.95
Bra008443.1-P	Field mustard	cytosol	56.78	50.95
CDX67965	Canola	cytosol	56.36	50.38
Bra003583.1-P	Field mustard	cytosol	56.36	50.38
KRH25929	Soybean	cytosol	17.37	47.13
Solyc03g117060.2.1	Tomato	nucleus	58.9	46.33
KRH47287	Soybean	nucleus	47.46	46.09
KRH37351	Soybean	endoplasmic reticulum	46.61	45.45
KRH44630	Soybean	cytosol	46.61	45.27
TraesCS7A01G266000.1	Wheat	nucleus	45.34	43.15
TraesCS7B01G166400.1	Wheat	cytosol	45.34	43.15
TraesCS7D01G268700.1	Wheat	cytosol	44.92	42.74
CDX67964	Canola	cytosol	31.78	41.9
Zm00001d031703_P001	Maize	cytosol, plasma membrane	44.92	40.46
KRH12348	Soybean	endoplasmic reticulum, nucleus	46.61	40.44
EES15262	Sorghum	cytosol	44.49	40.08
Os08t0542100-01	Rice	nucleus	46.61	40.0
Zm00001d052719_P002	Maize	cytosol	43.64	39.31
TraesCS1D01G134300.1	Wheat	cytosol	32.2	31.54

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:100500005	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	EMBL:ACUP02012053	EnsemblPlantsGene:GLYMA_19G116600
GO:GO:0000463	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:I1N8D5	InterPro:IPR023106
InterPro:IPR036919	EnsemblPlants:KRG94901	ProteinID:KRG94901	ProteinID:KRG94901.1	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327
PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI00023DDC6D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:37203172..37206066

Molecular Weight (calculated)

27797.1 Da

IEP (calculated)

10.555

GRAVY (calculated)

-0.752

Length

236 amino acids

Sequence
(BLAST)

001: MAEDDSKPLN YISEVILKKR KSTEAWALRK KEQFQQKKFQ SIRKPEDFIH EYRNKEVDLI RMKRRVKRKV PEANSNTMII IRIQGKKDMH PRTRKVLYSL
101: GLRRRFSAVF VKPSEGIMAK LQRVEPYVTY GYPNLKSIKE LIYKKGHARM EQRKVPLTDN NIIEQELGKF GIVCIEDMVH QIYNAGPHFK EVARFMWPFE
201: LNKPAEGLKG SKTIFKEGGD TGNREDLINE LINKMN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.