Factsheet for Bra008443.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66947	Canola	cytosol	98.1	98.1
CDY53223	Canola	cytosol	97.72	97.72
Bra003583.1-P	Field mustard	cytosol	87.83	87.5
AT1G80750.1	Thale cress	cytosol	80.23	85.43
VIT_09s0070g00130.t01	Wine grape	cytosol	53.61	57.32
KRH06635	Soybean	cytosol	51.33	57.2
KRG94901	Soybean	nucleus	50.95	56.78
PGSC0003DMT400073431	Potato	cytosol	50.57	54.06
Solyc06g068400.2.1	Tomato	cytosol, nucleus	50.19	53.66
PGSC0003DMT400036807	Potato	cytosol	49.81	53.25
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	35.74	52.81
TraesCS7D01G268700.1	Wheat	cytosol	43.73	46.37
TraesCS7A01G266000.1	Wheat	nucleus	43.35	45.97
TraesCS7B01G166400.1	Wheat	cytosol	43.35	45.97
Solyc03g117060.2.1	Tomato	nucleus	50.95	44.67
Os08t0542100-01	Rice	nucleus	46.01	44.0
Bra024895.1-P	Field mustard	cytosol	39.92	43.39
Bra014334.1-P	Field mustard	cytosol	39.54	42.98
Bra017461.1-P	Field mustard	cytosol	39.16	42.56
EES15262	Sorghum	cytosol	41.83	41.98
Zm00001d052719_P002	Maize	cytosol	41.44	41.6
Zm00001d031703_P001	Maize	cytosol, plasma membrane	41.44	41.6
Bra037665.1-P	Field mustard	cytosol	37.64	40.91
Bra004806.1-P	Field mustard	cytosol	37.26	40.5
Bra000341.1-P	Field mustard	cytosol	28.52	38.27
TraesCS1D01G134300.1	Wheat	cytosol	30.42	33.2

Protein Annotations

EnsemblPlants:Bra008443.1	EnsemblPlants:Bra008443.1-P	EnsemblPlantsGene:Bra008443	Gene3D:1.10.15.30	Gene3D:3.30.1390.20	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk
InterPro:Ribosomal_L7_euk_arc	PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	PFAM:PF00327	PFAM:PF08079	SUPFAM:SSF55129
TIGRFAMs:TIGR01310	UniParc:UPI0002546A6C	UniProt:M4CW46	MapMan:17.1.2.1.5	:	:

Description

AT1G80750 (E=3e-120) | 60S ribosomal protein L7 (RPL7A)

Coordinates

chrA02:-:15665421..15666800

Molecular Weight (calculated)

29968.8 Da

IEP (calculated)

10.283

GRAVY (calculated)

-0.483

Length

263 amino acids

Sequence
(BLAST)

001: MSEEEPKVMA VEEPTVMAVE EPKGLDYIPE VILKKRKNRD ELAFIRKKQL ELGNFGKKKK KVADIKRPED FVLEFRAKEV DLIRMKQRVK RPKSSPAPIN
101: SNLVFIVRIQ GKNDMHPKTK KVLNSMQLRS TFTGVFAKAT DGLFQKLLKV QPYVTYGYPS DKSVKDLIFK KGYTIIEGNP VPLTDNNIIE QALGEHGIFC
201: IEDLVNEISR VGVHFREVMR FLGPLKLNKP EAGVLRGKKQ VFSDGGDTGN REDKINDLII KMN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.