Factsheet for Solyc03g117060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036807	Potato	cytosol	78.67	95.94
Solyc06g068400.2.1	Tomato	cytosol, nucleus	70.33	85.77
VIT_09s0070g00130.t01	Wine grape	cytosol	53.0	64.63
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	36.33	61.24
KRH06635	Soybean	cytosol	47.0	59.75
KRG94901	Soybean	nucleus	46.33	58.9
CDX79356	Canola	cytosol	46.33	54.09
AT1G80750.1	Thale cress	cytosol	44.33	53.85
TraesCS7B01G166400.1	Wheat	cytosol	42.67	51.61
Bra003583.1-P	Field mustard	cytosol	45.33	51.52
CDX67965	Canola	cytosol	45.33	51.52
CDY66947	Canola	cytosol	45.0	51.33
Bra008443.1-P	Field mustard	cytosol	44.67	50.95
TraesCS7A01G266000.1	Wheat	nucleus	42.0	50.81
CDY53223	Canola	cytosol	44.33	50.57
TraesCS7D01G268700.1	Wheat	cytosol	41.67	50.4
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	38.67	47.93
Os08t0542100-01	Rice	nucleus	43.33	47.27
EES15262	Sorghum	cytosol	40.33	46.18
Zm00001d052719_P002	Maize	cytosol	40.0	45.8
Zm00001d031703_P001	Maize	cytosol, plasma membrane	39.0	44.66
CDX67964	Canola	cytosol	25.67	43.02
TraesCS1D01G134300.1	Wheat	cytosol	28.33	35.27

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	GO:GO:0000463	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	InterPro:IPR023106	InterPro:IPR036919	UniProt:K4BLK8	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327
PFAM:PF08079	PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like
InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	EnsemblPlantsGene:Solyc03g117060.2	EnsemblPlants:Solyc03g117060.2.1	TIGRFAMs:TIGR01310
UniParc:UPI00027674D5	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:66320966..66325746

Molecular Weight (calculated)

34541.0 Da

IEP (calculated)

10.541

GRAVY (calculated)

-0.663

Length

300 amino acids

Sequence
(BLAST)

001: MESGERDFWD RKHSSFTGPK SKTLNLSHPN LVCGLAPLRR TTRRRNPPEA LSNSMAEEVP QSLNYIPEVI LKKRKNNEEW AIRRKLQLEQ KVKRLKSDNF
101: VIKKPEQFIR EYRDKEMDLI QMKQRGKNRS RRAFVTSESS LLFVIRIGGK SDMHPRTRKL LYSLRLRKIF NGVFVKADAR ILEILQKVEP FVTYGYPNLK
201: SIKDLIYKKG AGKIDNQRVP LTSNEVVEQA LGQNGILCLE DVVTEIANVG PHFKEVTSFL CPFALNKPEK ALQGKKKRFS DGGDSGNCED HINELVSKMN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.