Factsheet for Zm00001d052719_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031703_P001	Maize	cytosol, plasma membrane	90.84	90.84
EES15262	Sorghum	cytosol	89.69	89.69
TraesCS7B01G166400.1	Wheat	cytosol	65.65	69.35
TraesCS7A01G266000.1	Wheat	nucleus	65.27	68.95
TraesCS7D01G268700.1	Wheat	cytosol	64.89	68.55
Os08t0542100-01	Rice	nucleus	66.79	63.64
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	40.84	60.11
Solyc06g068400.2.1	Tomato	cytosol, nucleus	48.09	51.22
PGSC0003DMT400073431	Potato	cytosol	47.71	50.81
PGSC0003DMT400036807	Potato	cytosol	45.8	48.78
TraesCS1D01G134300.1	Wheat	cytosol	43.51	47.3
VIT_09s0070g00130.t01	Wine grape	cytosol	43.13	45.94
AT1G80750.1	Thale cress	cytosol	42.37	44.94
CDX79356	Canola	cytosol	43.89	44.75
KRG94901	Soybean	nucleus	39.31	43.64
KRH06635	Soybean	cytosol	38.93	43.22
CDY66947	Canola	cytosol	41.98	41.83
Zm00001d002395_P002	Maize	cytosol, extracellular	38.93	41.8
Bra003583.1-P	Field mustard	cytosol	41.98	41.67
CDX67965	Canola	cytosol	41.98	41.67
Zm00001d041838_P003	Maize	mitochondrion	19.85	41.6
CDY53223	Canola	cytosol	41.6	41.44
Bra008443.1-P	Field mustard	cytosol	41.6	41.44
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	38.17	40.82
Zm00001d024373_P001	Maize	cytosol	38.17	40.49
Solyc03g117060.2.1	Tomato	nucleus	45.8	40.0
Zm00001d026254_P001	Maize	plastid	37.4	39.84
Zm00001d030114_P001	Maize	cytosol	36.26	37.7
CDX67964	Canola	cytosol	21.76	31.84

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ProteinID:AQK57806.1	ProteinID:AQK57807.1	EMBL:BT063216
UniProt:C0P4J7	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	PANTHER:PTHR11524
PANTHER:PTHR11524:SF11	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129
UniParc:UPI0001948F3C	EnsemblPlantsGene:Zm00001d052719	EnsemblPlants:Zm00001d052719_P002	EnsemblPlants:Zm00001d052719_T002	SEG:seg	:

Description

60S ribosomal protein L7-1

Coordinates

chr4:+:198623918..198625685

Molecular Weight (calculated)

30324.3 Da

IEP (calculated)

10.905

GRAVY (calculated)

-0.493

Length

262 amino acids

Sequence
(BLAST)

001: MGAGGEEAPR IIVPMAVEGT PNQLAFVEES KLQKRKENVD WAVRNRERRA AKRQRIRDEH KVAVRRPEEF VTAFRNKERD FLRMRTRIKV RSQPPVEALG
101: SRLVFAIRIP GSVDLHPHIR KVLRKLRLTK VLTGVFLRAT ELTLKRLLVV EPFVTYGFPN LKSVKELIYK KGRGFFDMEP FPLTSNDLIE KALGDHGIIC
201: LEDLVYEIAT VGPHFREASR FLMPFQLKCP ERRLQMKRKP YRDGGDSGNR GDKVNELIEK LN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.