Factsheet for Zm00001d002395_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT2G01250.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT2G01250.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026254_P001	Maize	plastid	96.72	95.94
KXG27062	Sorghum	cytosol	90.57	94.44
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	93.44	93.06
CDX95588	Canola	cytosol	20.49	92.59
Os04t0605900-01	Rice	plastid	92.21	92.21
Zm00001d024373_P001	Maize	cytosol	93.03	91.9
TraesCS5A01G452400.1	Wheat	nucleus	90.16	90.16
TraesCS5B01G461300.1	Wheat	cytosol	90.16	90.16
Zm00001d030114_P001	Maize	cytosol	93.03	90.08
TraesCS5D01G462800.1	Wheat	cytosol, golgi	89.75	89.75
HORVU5Hr1G108990.2	Barley	cytosol	90.16	89.07
TraesCS2A01G432600.1	Wheat	cytosol, unclear	87.3	87.3
TraesCS2D01G430500.1	Wheat	golgi	87.3	87.3
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	86.89	86.89
GSMUA_Achr10P...	Banana	cytosol	84.43	84.43
HORVU2Hr1G078780.1	Barley	cytosol	17.62	84.31
GSMUA_Achr11P...	Banana	cytosol	84.02	84.02
GSMUA_Achr4P05780_001	Banana	cytosol	83.61	83.61
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	29.92	82.02
KRH47287	Soybean	nucleus	79.92	80.25
KRH44630	Soybean	cytosol	79.1	79.42
PGSC0003DMT400075548	Potato	cytosol	77.87	79.17
CDY17884	Canola	cytosol, extracellular	77.87	78.51
AT2G01250.1	Thale cress	cytosol	77.87	78.51
Bra004806.1-P	Field mustard	cytosol	77.87	78.51
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	77.87	78.51
PGSC0003DMT400051218	Potato	cytosol	77.87	78.51
PGSC0003DMT400053653	Potato	cytosol	78.69	78.37
KRH37351	Soybean	endoplasmic reticulum	77.46	78.1
VIT_09s0054g00150.t01	Wine grape	cytosol	27.87	77.27
CDY37358	Canola	cytosol	76.64	77.27
Bra037665.1-P	Field mustard	cytosol	76.64	77.27
Bra017461.1-P	Field mustard	cytosol	76.64	77.27
CDX83440	Canola	cytosol, extracellular	76.64	76.95
CDY25941	Canola	cytosol	76.23	76.86
CDY40393	Canola	cytosol	76.23	76.86
CDY41074	Canola	cytosol	76.23	76.86
CDY17686	Canola	cytosol	76.23	76.86
Bra014334.1-P	Field mustard	cytosol	76.23	76.86
CDX77810	Canola	cytosol, extracellular	76.23	76.86
AT3G13580.3	Thale cress	cytosol	76.64	76.64
Bra000341.1-P	Field mustard	cytosol	61.48	76.53
Bra024895.1-P	Field mustard	cytosol	75.82	76.45
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	30.33	76.29
Zm00001d041838_P003	Maize	mitochondrion	38.52	75.2
AT2G44120.2	Thale cress	cytosol	75.82	74.9
CDY30456	Canola	cytosol	77.46	73.54
HORVU2Hr1G100970.4	Barley	mitochondrion	86.07	71.92
GSMUA_Achr4P12660_001	Banana	cytosol	83.2	70.0
KRH12348	Soybean	endoplasmic reticulum, nucleus	77.87	69.85
KRH25929	Soybean	cytosol	22.95	64.37
CDY23419	Canola	extracellular	77.05	62.67
CDY01953	Canola	cytosol	32.38	55.24
VIT_09s0054g00070.t01	Wine grape	extracellular	27.87	54.84
Zm00001d052719_P002	Maize	cytosol	41.8	38.93
CDX79781	Canola	extracellular	25.41	38.75
Zm00001d031703_P001	Maize	cytosol, plasma membrane	41.39	38.55

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:100191368	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:B4F8K1	EMBL:BT033439
ncoils:Coil	EMBL:EU964729	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	ProteinID:ONM14182.1	ProteinID:ONM14183.1
PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS
InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129
TIGRFAMs:TIGR01310	UniParc:UPI0000E64728	EnsemblPlantsGene:Zm00001d002395	EnsemblPlants:Zm00001d002395_P002	EnsemblPlants:Zm00001d002395_T002	SEG:seg

Description

60S ribosomal protein L7-2

Coordinates

chr2:-:11863804..11866661

Molecular Weight (calculated)

28487.1 Da

IEP (calculated)

10.719

GRAVY (calculated)

-0.623

Length

244 amino acids

Sequence
(BLAST)

001: MSSEAVKVAV PESVLRKRKR EEQWAAEKKE KSLAERKKSI ENRKLIFTRA KQYAEEYDAQ EKELVQLKRE ARLKGGFYVS PEAKLLFVIR IRGINAMHPK
101: TRKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVAYGY PNLKSVRELI YKRGYGKLNK QRIPLSNNQV IEEGLGKHNI ICIEDLVHEI MTVGPHFKEA
201: NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NRENYINELI KRMN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.