Factsheet for Bra000341.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75637	Sorghum	cytosol	25.51	92.59
CDX83440	Canola	cytosol, extracellular	98.47	79.42
Bra004806.1-P	Field mustard	cytosol	95.41	77.27
Bra037665.1-P	Field mustard	cytosol	95.41	77.27
VIT_09s0054g00090.t01	Wine grape	cytosol	51.53	74.81
AT2G44120.2	Thale cress	cytosol	91.84	72.87
Bra014334.1-P	Field mustard	cytosol	88.27	71.49
Bra017461.1-P	Field mustard	cytosol	87.76	71.07
Bra024895.1-P	Field mustard	cytosol	87.24	70.66
PGSC0003DMT400075548	Potato	cytosol	82.14	67.08
KRH47287	Soybean	nucleus	83.16	67.08
KRH44630	Soybean	cytosol	82.65	66.67
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	82.14	66.53
PGSC0003DMT400051218	Potato	cytosol	82.14	66.53
KRH37351	Soybean	endoplasmic reticulum	81.63	66.12
VIT_09s0054g00010.t01	Wine grape	cytosol	81.63	65.04
PGSC0003DMT400053653	Potato	cytosol	81.12	64.9
VIT_11s0052g00290.t01	Wine grape	cytosol	80.1	64.08
VIT_09s0054g00140.t01	Wine grape	cytosol	60.2	63.44
Os04t0605900-01	Rice	plastid	77.55	62.3
Zm00001d002395_P002	Maize	cytosol, extracellular	76.53	61.48
Zm00001d026254_P001	Maize	plastid	77.04	61.38
Os08t0234000-01	Rice	nucleus	76.53	61.22
TraesCS5B01G461300.1	Wheat	cytosol	76.02	61.07
TraesCS5A01G452400.1	Wheat	nucleus	76.02	61.07
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	76.02	60.82
OQU75620	Sorghum	cytosol	76.02	60.82
KXG24783	Sorghum	cytosol	76.02	60.82
TraesCS5D01G462800.1	Wheat	cytosol, golgi	75.51	60.66
HORVU5Hr1G108990.2	Barley	cytosol	76.02	60.32
TraesCS2A01G432600.1	Wheat	cytosol, unclear	74.49	59.84
KRH12348	Soybean	endoplasmic reticulum, nucleus	82.65	59.56
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	73.98	59.43
KXG27062	Sorghum	cytosol	70.92	59.4
Zm00001d024373_P001	Maize	cytosol	74.49	59.11
TraesCS2D01G430500.1	Wheat	golgi	73.47	59.02
Zm00001d030114_P001	Maize	cytosol	75.51	58.73
VIT_09s0054g00210.t01	Wine grape	cytosol	40.31	53.02
VIT_00s2761g00010.t01	Wine grape	cytosol	13.27	50.98
KXG27000	Sorghum	plastid	71.43	50.0
VIT_09s0054g00030.t01	Wine grape	cytosol	38.78	50.0
HORVU2Hr1G100970.4	Barley	mitochondrion	73.98	49.66
VIT_00s1526g00010.t01	Wine grape	cytosol	13.27	48.15
Zm00001d041838_P003	Maize	mitochondrion	30.1	47.2
HORVU2Hr1G078780.1	Barley	cytosol	12.24	47.06
OQU80131	Sorghum	cytosol	76.02	44.88
VIT_09s0054g00060.t01	Wine grape	cytosol	27.55	43.9
VIT_09s0054g00190.t01	Wine grape	cytosol	28.57	42.42
VIT_00s2416g00010.t01	Wine grape	cytosol	16.33	41.56
KRH25929	Soybean	cytosol	18.37	41.38
Bra003583.1-P	Field mustard	cytosol	38.78	28.79
Bra008443.1-P	Field mustard	cytosol	38.27	28.52
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	12.76	28.09
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	13.78	27.84
HORVU5Hr1G109020.1	Barley	extracellular	10.2	27.03
GSMUA_AchrUn_...	Banana	cytosol	10.71	26.58
HORVU7Hr1G057320.1	Barley	cytosol	0.51	2.17

Protein Annotations

EnsemblPlants:Bra000341.1	EnsemblPlants:Bra000341.1-P	EnsemblPlantsGene:Bra000341	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	InterPro:Ribosomal_L30_N
InterPro:Ribosomal_L7_euk_arc	ncoils:Coil	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	PFAM:PF08079	SEG:seg
SUPFAM:SSF55129	UniParc:UPI000253FDBD	UniProt:M4C813	MapMan:17.1.2.1.5	:	:

Description

AT2G44120 (E=4e-056) | 60S ribosomal protein L7 (RPL7C)

Coordinates

chrA03:-:10638608..10639652

Molecular Weight (calculated)

22687.7 Da

IEP (calculated)

10.327

GRAVY (calculated)

-0.615

Length

196 amino acids

Sequence
(BLAST)

001: MADSKVVVPE SVLKKIKREE EWALAKKQEA EAAKKKSVET RKLIFKRAEQ YAKEYAQKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GYPNLKSVRE
101: LIYKRGYGKL NHQRIALTDN SIVAEGLGKH EIICVEDLIH EIMTVGPHFK EANNFLWPFQ LKAPLGGLKK KRNHYVEGGD AGNRENFINE LVRRMN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.