Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0054g00210.t01 | Wine grape | cytosol | 75.56 | 68.46 |
| VIT_09s0054g00030.t01 | Wine grape | cytosol | 74.07 | 65.79 |
| VIT_09s0054g00060.t01 | Wine grape | cytosol | 55.56 | 60.98 |
| VIT_00s1526g00010.t01 | Wine grape | cytosol | 22.96 | 57.41 |
| VIT_00s2761g00010.t01 | Wine grape | cytosol | 21.48 | 56.86 |
| VIT_09s0054g00190.t01 | Wine grape | cytosol | 51.11 | 52.27 |
| Bra000341.1-P | Field mustard | cytosol | 74.81 | 51.53 |
| VIT_09s0054g00010.t01 | Wine grape | cytosol | 90.37 | 49.59 |
| VIT_09s0054g00140.t01 | Wine grape | cytosol | 66.67 | 48.39 |
| VIT_11s0052g00290.t01 | Wine grape | cytosol | 83.7 | 46.12 |
| VIT_00s2416g00010.t01 | Wine grape | cytosol | 25.93 | 45.45 |
| AT2G01250.1 | Thale cress | cytosol | 78.52 | 43.8 |
| CDY40393 | Canola | cytosol | 77.78 | 43.39 |
| CDY37358 | Canola | cytosol | 77.78 | 43.39 |
| CDY25941 | Canola | cytosol | 77.78 | 43.39 |
| CDY17686 | Canola | cytosol | 77.78 | 43.39 |
| Bra014334.1-P | Field mustard | cytosol | 77.78 | 43.39 |
| Bra024895.1-P | Field mustard | cytosol | 77.78 | 43.39 |
| CDX77810 | Canola | cytosol, extracellular | 77.78 | 43.39 |
| PGSC0003DMT400075548 | Potato | cytosol | 77.04 | 43.33 |
| AT3G13580.3 | Thale cress | cytosol | 77.78 | 43.03 |
| Bra017461.1-P | Field mustard | cytosol | 77.04 | 42.98 |
| CDY41074 | Canola | cytosol | 76.3 | 42.56 |
| Bra004806.1-P | Field mustard | cytosol | 74.81 | 41.74 |
| CDY17884 | Canola | cytosol, extracellular | 74.81 | 41.74 |
| PGSC0003DMT400053653 | Potato | cytosol | 75.56 | 41.63 |
| PGSC0003DMT400051218 | Potato | cytosol | 74.07 | 41.32 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 74.07 | 41.32 |
| AT2G44120.2 | Thale cress | cytosol | 75.56 | 41.3 |
| CDX83440 | Canola | cytosol, extracellular | 74.07 | 41.15 |
| Bra037665.1-P | Field mustard | cytosol | 73.33 | 40.91 |
| CDY30456 | Canola | cytosol | 74.81 | 39.3 |
| CDY01953 | Canola | cytosol | 37.78 | 35.66 |
| CDY23419 | Canola | extracellular | 73.33 | 33.0 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 20.0 | 30.68 |
| CDX79781 | Canola | extracellular | 36.3 | 30.62 |
| GSMUA_AchrUn_... | Banana | cytosol | 15.56 | 26.58 |
| VIT_09s0070g00130.t01 | Wine grape | cytosol | 45.93 | 25.2 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 22.96 | 25.0 |
| CDX95588 | Canola | cytosol | 6.67 | 16.67 |
Protein Annotations
| MapMan:35.1 | ProteinID:CCB45087 | ProteinID:CCB45087.1 | ncoils:Coil | UniProt:F6GYQ1 | EMBL:FN594972 |
| GO:GO:0000463 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf |
| PFAM:PF08079 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | InterPro:Ribosomal_L30_N | SUPFAM:SSF55129 | UniParc:UPI0002109D15 |
| ArrayExpress:VIT_09s0054g00090 | EnsemblPlantsGene:VIT_09s0054g00090 | EnsemblPlants:VIT_09s0054g00090.t01 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr9:+:20279684..20284103
Molecular Weight (calculated)
15787.4 Da
IEP (calculated)
10.119
GRAVY (calculated)
-0.651
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIGKKQEVE AKKKKNAENR KLIYSRAKQY AKEYEEQQKE LIQLKHEAKL KGGFYVDPEV KLLFIIRIRG YPNLKSVREL IYKRGYGKLN KQRTALTDNS
101: IVEQALGKFG IICMEDLIHE IMTVGPHFKE ANNFL
101: IVEQALGKFG IICMEDLIHE IMTVGPHFKE ANNFL
001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN
Arabidopsis Description
RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.