Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95588 | Canola | cytosol | 21.01 | 100.0 |
| Bra037665.1-P | Field mustard | cytosol | 93.0 | 98.76 |
| CDY17884 | Canola | cytosol, extracellular | 91.44 | 97.11 |
| CDX83440 | Canola | cytosol, extracellular | 89.88 | 95.06 |
| OQU75637 | Sorghum | cytosol | 19.46 | 92.59 |
| AT2G44120.2 | Thale cress | cytosol | 88.33 | 91.9 |
| CDX77810 | Canola | cytosol, extracellular | 85.99 | 91.32 |
| CDY40393 | Canola | cytosol | 85.99 | 91.32 |
| CDY17686 | Canola | cytosol | 85.99 | 91.32 |
| CDY37358 | Canola | cytosol | 85.6 | 90.91 |
| CDY41074 | Canola | cytosol | 85.21 | 90.5 |
| CDY25941 | Canola | cytosol | 85.21 | 90.5 |
| KRH37351 | Soybean | endoplasmic reticulum | 79.77 | 84.71 |
| PGSC0003DMT400051218 | Potato | cytosol | 79.77 | 84.71 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 79.77 | 84.71 |
| VIT_09s0054g00140.t01 | Wine grape | cytosol | 61.09 | 84.41 |
| VIT_00s2761g00010.t01 | Wine grape | cytosol | 16.73 | 84.31 |
| PGSC0003DMT400075548 | Potato | cytosol | 78.6 | 84.17 |
| KRH47287 | Soybean | nucleus | 79.38 | 83.95 |
| KRH44630 | Soybean | cytosol | 78.99 | 83.54 |
| VIT_09s0054g00010.t01 | Wine grape | cytosol | 77.82 | 81.3 |
| VIT_11s0052g00290.t01 | Wine grape | cytosol | 77.43 | 81.22 |
| PGSC0003DMT400053653 | Potato | cytosol | 77.04 | 80.82 |
| VIT_00s1526g00010.t01 | Wine grape | cytosol | 16.73 | 79.63 |
| CDY23419 | Canola | extracellular | 91.44 | 78.33 |
| Os04t0605900-01 | Rice | plastid | 73.93 | 77.87 |
| TraesCS5A01G452400.1 | Wheat | nucleus | 73.54 | 77.46 |
| TraesCS5B01G461300.1 | Wheat | cytosol | 73.54 | 77.46 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 73.54 | 77.46 |
| Zm00001d026254_P001 | Maize | plastid | 73.93 | 77.24 |
| VIT_09s0054g00210.t01 | Wine grape | cytosol | 44.75 | 77.18 |
| Zm00001d050193_P001 | Maize | cytosol, plasma membrane, plastid | 73.54 | 77.14 |
| OQU75620 | Sorghum | cytosol | 73.54 | 77.14 |
| KXG24783 | Sorghum | cytosol | 73.54 | 77.14 |
| TraesCS5D01G462800.1 | Wheat | cytosol, golgi | 73.15 | 77.05 |
| Os08t0234000-01 | Rice | nucleus | 73.15 | 76.73 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 73.54 | 76.52 |
| HORVU2Hr1G078780.1 | Barley | cytosol | 15.18 | 76.47 |
| TraesCS2A01G432600.1 | Wheat | cytosol, unclear | 72.37 | 76.23 |
| HORVU7Hr1G057320.1 | Barley | cytosol | 13.62 | 76.09 |
| KXG27062 | Sorghum | cytosol | 69.26 | 76.07 |
| TraesCS2B01G453900.1 | Wheat | cytosol, golgi, unclear | 71.98 | 75.82 |
| VIT_09s0054g00060.t01 | Wine grape | cytosol | 36.19 | 75.61 |
| TraesCS2D01G430500.1 | Wheat | golgi | 71.6 | 75.41 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 79.77 | 75.37 |
| Zm00001d024373_P001 | Maize | cytosol | 72.37 | 75.3 |
| VIT_09s0054g00090.t01 | Wine grape | cytosol | 39.3 | 74.81 |
| VIT_09s0054g00030.t01 | Wine grape | cytosol | 43.58 | 73.68 |
| HORVU7Hr1G120140.1 | Barley | extracellular, peroxisome | 25.29 | 73.03 |
| Zm00001d030114_P001 | Maize | cytosol | 71.21 | 72.62 |
| CDY01953 | Canola | cytosol | 39.3 | 70.63 |
| HORVU6Hr1G079960.1 | Barley | cytosol, extracellular | 25.68 | 68.04 |
| Zm00001d041838_P003 | Maize | mitochondrion | 32.3 | 66.4 |
| KRH25929 | Soybean | cytosol | 22.18 | 65.52 |
| HORVU2Hr1G100970.4 | Barley | mitochondrion | 72.37 | 63.7 |
| VIT_00s2416g00010.t01 | Wine grape | cytosol | 18.29 | 61.04 |
| KXG27000 | Sorghum | plastid | 64.98 | 59.64 |
| OQU80131 | Sorghum | cytosol | 73.93 | 57.23 |
| CDX79781 | Canola | extracellular | 35.41 | 56.88 |
| VIT_09s0054g00190.t01 | Wine grape | cytosol | 28.02 | 54.55 |
| CDX79356 | Canola | cytosol | 38.91 | 38.91 |
| CDY66947 | Canola | cytosol | 39.3 | 38.4 |
| CDY53223 | Canola | cytosol | 39.3 | 38.4 |
| CDX67965 | Canola | cytosol | 38.52 | 37.5 |
| CDX67964 | Canola | cytosol | 21.79 | 31.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 8.95 | 29.11 |
| HORVU5Hr1G109020.1 | Barley | extracellular | 7.78 | 27.03 |
Protein Annotations
| Gene3D:1.10.15.30 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | GO:A0A078GY79 | UniProt:A0A078GY79 | EnsemblPlants:CDY30456 |
| ProteinID:CDY30456 | ProteinID:CDY30456.1 | ncoils:Coil | EnsemblPlantsGene:GSBRNA2T00045160001 | InterPro:IPR023106 | InterPro:IPR036919 |
| InterPro:L30_ferredoxin-like_sf | PFAM:PF00327 | PFAM:PF08079 | ScanProsite:PS00634 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 |
| InterPro:Ribosomal_L30_CS | InterPro:Ribosomal_L30_N | InterPro:Ribosomal_L30_central_dom_arc | InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk | InterPro:Ribosomal_L7_euk_arc |
| SUPFAM:SSF55129 | TIGRFAMs:TIGR01310 | UniParc:UPI0004EE0E19 | SEG:seg | : | : |
Description
BnaA04g25570DBnaA04g25570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY79]
Coordinates
chrLK032253:-:327992..330220
Molecular Weight (calculated)
29876.8 Da
IEP (calculated)
10.486
GRAVY (calculated)
-0.517
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MHLQSSFNYL PLKEEMAESK VVVPESVLKK IKREEEWALA KKQEAEAAKK KSVETRKLIF KRAEQYAKEY AEKDNELIRL KREAKLKGGF YVDPEAKLLF
101: IIRIRGINAI DPKTKKILQL LRLRQIFNGV FLKVNKATIN MLRRVEPYVT YGYPNLKTVK ELIYKRGYGK LNHQRIALTD NSIVSQGLGK HNIICVEDLI
201: HEIMTVGPHF KEANNFLWPF QLKAPLGGLK KKRNHYVEGG DAGNRENFIN ELVRRMN
101: IIRIRGINAI DPKTKKILQL LRLRQIFNGV FLKVNKATIN MLRRVEPYVT YGYPNLKTVK ELIYKRGYGK LNHQRIALTD NSIVSQGLGK HNIICVEDLI
201: HEIMTVGPHF KEANNFLWPF QLKAPLGGLK KKRNHYVEGG DAGNRENFIN ELVRRMN
001: MYVGEMAESK VVVPESVLKK IKRQEEWALA KKDEAVAAKK KSVEARKLIF KRAEQYAKEY AEKDNELIRL KREAKLKGGF YVDPEAKLLF IIRIRGINAI
101: DPKTKKILQL LRLRQIFNGV FLKVNKATVN MLRRVEPYVT YGYPNLKSVK ELIYKRGYGK LNHQRIALTD NSIVDQALGK HGIICVEDLI HEIMTVGPHF
201: KEANNFLWPF QLKAPLGGLK KKRNHYVEGG DAGNRENFIN ELVRRMN
101: DPKTKKILQL LRLRQIFNGV FLKVNKATVN MLRRVEPYVT YGYPNLKSVK ELIYKRGYGK LNHQRIALTD NSIVDQALGK HGIICVEDLI HEIMTVGPHF
201: KEANNFLWPF QLKAPLGGLK KKRNHYVEGG DAGNRENFIN ELVRRMN
Arabidopsis Description
Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.