Factsheet for Zm00001d024373_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT2G01250.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT2G01250.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75620	Sorghum	cytosol	96.76	97.55
KXG24783	Sorghum	cytosol	96.76	97.55
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	96.36	97.14
Zm00001d002395_P002	Maize	cytosol, extracellular	91.9	93.03
CDX95588	Canola	cytosol	20.24	92.59
Zm00001d026254_P001	Maize	plastid	91.9	92.28
Os04t0605900-01	Rice	plastid	88.66	89.75
TraesCS5D01G462800.1	Wheat	cytosol, golgi	86.64	87.7
TraesCS5B01G461300.1	Wheat	cytosol	86.64	87.7
TraesCS5A01G452400.1	Wheat	nucleus	86.64	87.7
HORVU5Hr1G108990.2	Barley	cytosol	86.64	86.64
Zm00001d030114_P001	Maize	cytosol	88.26	86.51
HORVU2Hr1G078780.1	Barley	cytosol	17.81	86.27
TraesCS2A01G432600.1	Wheat	cytosol, unclear	84.62	85.66
TraesCS2D01G430500.1	Wheat	golgi	84.62	85.66
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	84.21	85.25
GSMUA_Achr4P05780_001	Banana	cytosol	83.0	84.02
GSMUA_Achr11P...	Banana	cytosol	82.19	83.2
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	29.96	83.15
GSMUA_Achr10P...	Banana	cytosol	81.78	82.79
KRH44630	Soybean	cytosol	77.73	79.01
VIT_09s0054g00150.t01	Wine grape	cytosol	27.94	78.41
KRH47287	Soybean	nucleus	76.92	78.19
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	30.36	77.32
KRH37351	Soybean	endoplasmic reticulum	75.71	77.27
PGSC0003DMT400075548	Potato	cytosol	74.9	77.08
CDY37358	Canola	cytosol	75.3	76.86
Bra004806.1-P	Field mustard	cytosol	75.3	76.86
CDY17884	Canola	cytosol, extracellular	75.3	76.86
CDY17686	Canola	cytosol	74.9	76.45
CDX77810	Canola	cytosol, extracellular	74.9	76.45
CDY40393	Canola	cytosol	74.9	76.45
Bra017461.1-P	Field mustard	cytosol	74.9	76.45
Bra014334.1-P	Field mustard	cytosol	74.9	76.45
AT3G13580.3	Thale cress	cytosol	75.3	76.23
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	74.49	76.03
PGSC0003DMT400051218	Potato	cytosol	74.49	76.03
CDY25941	Canola	cytosol	74.49	76.03
AT2G01250.1	Thale cress	cytosol	74.49	76.03
Bra024895.1-P	Field mustard	cytosol	74.49	76.03
Bra037665.1-P	Field mustard	cytosol	74.49	76.03
CDY41074	Canola	cytosol	74.49	76.03
PGSC0003DMT400053653	Potato	cytosol	75.3	75.92
CDX83440	Canola	cytosol, extracellular	74.09	75.31
Bra000341.1-P	Field mustard	cytosol	59.11	74.49
Zm00001d041838_P003	Maize	mitochondrion	37.65	74.4
AT2G44120.2	Thale cress	cytosol	73.28	73.28
CDY30456	Canola	cytosol	75.3	72.37
OQU80131	Sorghum	cytosol	96.76	71.99
HORVU2Hr1G100970.4	Barley	mitochondrion	83.0	70.21
KRH12348	Soybean	endoplasmic reticulum, nucleus	76.92	69.85
GSMUA_Achr4P12660_001	Banana	cytosol	80.97	68.97
KRH25929	Soybean	cytosol	22.67	64.37
CDY23419	Canola	extracellular	74.49	61.33
VIT_09s0054g00070.t01	Wine grape	extracellular	27.53	54.84
CDY01953	Canola	cytosol	31.58	54.55
Zm00001d052719_P002	Maize	cytosol	40.49	38.17
Zm00001d031703_P001	Maize	cytosol, plasma membrane	40.08	37.79
CDX79781	Canola	extracellular	23.48	36.25

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:100281971	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ProteinID:AQK41088.1	UniProt:B4FSG3
EMBL:BT040051	ncoils:Coil	EMBL:EU958964	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327
PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N
InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310
UniParc:UPI00017B74EE	EnsemblPlantsGene:Zm00001d024373	EnsemblPlants:Zm00001d024373_P001	EnsemblPlants:Zm00001d024373_T001	SEG:seg	:

Description

60S ribosomal protein L7-2

Coordinates

chr10:+:67656528..67659072

Molecular Weight (calculated)

28542.0 Da

IEP (calculated)

10.719

GRAVY (calculated)

-0.594

Length

247 amino acids

Sequence
(BLAST)

001: MSSAEAKAAA KAVPESVLRK RKREEQWAAD KKEKALADRK EALDSRKIIF ARAKQYAQEY DAQEKELVQL KREARLKGGF YVSPEAKLLF VVRIRGINAM
101: HPKTRKILQL LRLRQIFNGV FLKVNKATIN MLRRVEPYVA YGYPNLKSVR ELIYKRGYGK LNKQRIPLSN NNVIEEGLGK HNIICIEDLV HEIMTVGPHF
201: KEANNFLWPF KLKAPLGGLK KKRNHYVEGG DAGNRENYIN ELIKRMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.