Factsheet for GSMUA_Achr10P06250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	95.49	95.49
GSMUA_Achr4P05780_001	Banana	cytosol	94.26	94.26
Os08t0234000-01	Rice	nucleus	86.48	86.12
Zm00001d002395_P002	Maize	cytosol, extracellular	84.43	84.43
Os04t0605900-01	Rice	plastid	84.43	84.43
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	84.43	84.08
OQU75620	Sorghum	cytosol	84.43	84.08
KXG24783	Sorghum	cytosol	84.43	84.08
Zm00001d026254_P001	Maize	plastid	83.2	82.52
HORVU2Hr1G078780.1	Barley	cytosol	17.21	82.35
Zm00001d024373_P001	Maize	cytosol	82.79	81.78
TraesCS5D01G462800.1	Wheat	cytosol, golgi	81.15	81.15
TraesCS5B01G461300.1	Wheat	cytosol	81.15	81.15
TraesCS5A01G452400.1	Wheat	nucleus	81.15	81.15
TraesCS2A01G432600.1	Wheat	cytosol, unclear	81.15	81.15
HORVU5Hr1G108990.2	Barley	cytosol	81.97	80.97
KXG27062	Sorghum	cytosol	77.46	80.77
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	80.74	80.74
TraesCS2D01G430500.1	Wheat	golgi	80.33	80.33
GSMUA_Achr4P12660_001	Banana	cytosol	93.44	78.62
Zm00001d030114_P001	Maize	cytosol	80.74	78.17
GSMUA_Achr9P22960_001	Banana	cytosol	79.1	78.14
VIT_09s0054g00150.t01	Wine grape	cytosol	27.87	77.27
HORVU7Hr1G057320.1	Barley	cytosol	14.34	76.09
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	27.05	74.16
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	27.87	70.1
Zm00001d041838_P003	Maize	mitochondrion	34.84	68.0
HORVU2Hr1G100970.4	Barley	mitochondrion	80.74	67.47
KXG27000	Sorghum	plastid	71.31	62.14
OQU80131	Sorghum	cytosol	84.43	62.05
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	43.44	59.55
VIT_09s0054g00070.t01	Wine grape	extracellular	28.69	56.45
GSMUA_AchrUn_...	Banana	cytosol	11.89	36.71
HORVU5Hr1G109020.1	Barley	extracellular	7.38	24.32

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ncoils:Coil	EnsemblPlantsGene:GSMUA_Achr10G06250_001	EnsemblPlants:GSMUA_Achr10P06250_001
EnsemblPlants:GSMUA_Achr10T06250_001	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	UniProt:M0RFV2	PFAM:PF00327
PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N
InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310
UniParc:UPI000295B679	SEG:seg	:	:	:	:

Description

60S ribosomal protein L7-4 [Source:GMGC_GENE;Acc:GSMUA_Achr10G06250_001]

Coordinates

chr10:+:16685484..16687616

Molecular Weight (calculated)

28355.1 Da

IEP (calculated)

10.835

GRAVY (calculated)

-0.630

Length

244 amino acids

Sequence
(BLAST)

001: MAAEGPKAVV PESVLKKRKR EEQWALAKKQ ELDAKKKKAR ENRKLIFGRA QQYAKEYGSQ EKELIRLKRE ARLKGGFYVS PEAKLLFIIR IRGINAMHPK
101: TRKILQLLRL RQIFNGVFLK VNKATMNMLQ RVEPYVTYGY PNLKSVRELI YKRGYGKLNK QRIPLTDNSI IEQGLGKHGI ICIEDLVHEV MTVGPHFKEA
201: NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NREDYINELI RRMN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.