Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | Zm00001d004812_P002 | AT4G09570.1 | 19130088 |
| AT2G01250.1 | Zm00001d023560_P002 | AT4G09570.1 | 19130088 |
| AT2G01250.1 | Zm00001d053016_P002 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25929 | Soybean | cytosol | 40.8 | 58.62 |
| HORVU7Hr1G057320.1 | Barley | cytosol | 19.2 | 52.17 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 75.2 | 38.52 |
| Zm00001d026254_P001 | Maize | plastid | 75.2 | 38.21 |
| Zm00001d050193_P001 | Maize | cytosol, plasma membrane, plastid | 74.4 | 37.96 |
| Zm00001d024373_P001 | Maize | cytosol | 74.4 | 37.65 |
| GSMUA_Achr11P... | Banana | cytosol | 70.4 | 36.07 |
| GSMUA_Achr4P05780_001 | Banana | cytosol | 68.8 | 35.25 |
| PGSC0003DMT400075548 | Potato | cytosol | 67.2 | 35.0 |
| GSMUA_Achr10P... | Banana | cytosol | 68.0 | 34.84 |
| Zm00001d030114_P001 | Maize | cytosol | 69.6 | 34.52 |
| CDX83440 | Canola | cytosol, extracellular | 66.4 | 34.16 |
| Bra037665.1-P | Field mustard | cytosol | 65.6 | 33.88 |
| Bra004806.1-P | Field mustard | cytosol | 65.6 | 33.88 |
| CDY17884 | Canola | cytosol, extracellular | 65.6 | 33.88 |
| AT3G13580.3 | Thale cress | cytosol | 64.8 | 33.2 |
| KRH37351 | Soybean | endoplasmic reticulum | 64.0 | 33.06 |
| AT2G44120.2 | Thale cress | cytosol | 64.8 | 32.79 |
| PGSC0003DMT400053653 | Potato | cytosol | 64.0 | 32.65 |
| AT2G01250.1 | Thale cress | cytosol | 63.2 | 32.64 |
| Bra017461.1-P | Field mustard | cytosol | 63.2 | 32.64 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 63.2 | 32.64 |
| PGSC0003DMT400051218 | Potato | cytosol | 63.2 | 32.64 |
| KRH44630 | Soybean | cytosol | 63.2 | 32.51 |
| CDY30456 | Canola | cytosol | 66.4 | 32.3 |
| CDY37358 | Canola | cytosol | 62.4 | 32.23 |
| CDY40393 | Canola | cytosol | 62.4 | 32.23 |
| CDY41074 | Canola | cytosol | 62.4 | 32.23 |
| CDY25941 | Canola | cytosol | 62.4 | 32.23 |
| CDY17686 | Canola | cytosol | 62.4 | 32.23 |
| Bra014334.1-P | Field mustard | cytosol | 62.4 | 32.23 |
| Bra024895.1-P | Field mustard | cytosol | 62.4 | 32.23 |
| CDX77810 | Canola | cytosol, extracellular | 62.4 | 32.23 |
| KRH47287 | Soybean | nucleus | 62.4 | 32.1 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 21.6 | 30.68 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 66.4 | 30.51 |
| Bra000341.1-P | Field mustard | cytosol | 47.2 | 30.1 |
| GSMUA_Achr4P12660_001 | Banana | cytosol | 68.8 | 29.66 |
| CDX95588 | Canola | cytosol | 12.0 | 27.78 |
| CDY23419 | Canola | extracellular | 65.6 | 27.33 |
| HORVU5Hr1G109020.1 | Barley | extracellular | 14.4 | 24.32 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 21.6 | 21.77 |
| Zm00001d031703_P001 | Maize | cytosol, plasma membrane | 41.6 | 19.85 |
| Zm00001d052719_P002 | Maize | cytosol | 41.6 | 19.85 |
| CDY01953 | Canola | cytosol | 4.8 | 4.2 |
| CDX79781 | Canola | extracellular | 2.4 | 1.88 |
Protein Annotations
| EnsemblPlants:Zm00001d041838_P003 | EnsemblPlants:Zm00001d041838_T003 | EnsemblPlantsGene:Zm00001d041838 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk_arc |
| PANTHER:PTHR11524 | PFAM:PF00327 | ProteinID:ONM33803.1 | SUPFAM:SSF55129 | UniParc:UPI0008443E92 | UniProt:A0A1D6MYM8 |
| MapMan:17.1.2.1.5 | : | : | : | : | : |
Description
60S ribosomal protein L7-2
Coordinates
chr3:-:139956405..139957587
Molecular Weight (calculated)
14176.6 Da
IEP (calculated)
10.117
GRAVY (calculated)
-0.118
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSTSHMQRT VLCGPHAGIF NGVFLKVNKA TINMLRRVEP YVAYGYPNLK SVRELIYKRG YGKLNKQRIP LSNNQVIEEV CKLGTVHLGL GKHNIICVED
101: LVHEIMTVGP HFKEANNFLC RAVMP
101: LVHEIMTVGP HFKEANNFLC RAVMP
001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN
Arabidopsis Description
Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.