Factsheet for Bra037665.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004806.1-P	Field mustard	cytosol	96.69	96.69
Bra000341.1-P	Field mustard	cytosol	77.27	95.41
CDY30456	Canola	cytosol	98.76	93.0
OQU75637	Sorghum	cytosol	20.66	92.59
AT2G44120.2	Thale cress	cytosol	92.98	91.09
Bra014334.1-P	Field mustard	cytosol	90.5	90.5
Bra017461.1-P	Field mustard	cytosol	90.08	90.08
Bra024895.1-P	Field mustard	cytosol	89.67	89.67
VIT_00s2761g00010.t01	Wine grape	cytosol	17.77	84.31
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	83.88	83.88
PGSC0003DMT400051218	Potato	cytosol	83.88	83.88
KRH37351	Soybean	endoplasmic reticulum	83.88	83.88
VIT_09s0054g00140.t01	Wine grape	cytosol	64.46	83.87
PGSC0003DMT400075548	Potato	cytosol	83.06	83.75
KRH47287	Soybean	nucleus	83.47	83.13
KRH44630	Soybean	cytosol	83.06	82.72
VIT_09s0054g00010.t01	Wine grape	cytosol	81.82	80.49
VIT_11s0052g00290.t01	Wine grape	cytosol	81.41	80.41
PGSC0003DMT400053653	Potato	cytosol	80.99	80.0
VIT_00s1526g00010.t01	Wine grape	cytosol	17.77	79.63
Os04t0605900-01	Rice	plastid	77.69	77.05
CDY23419	Canola	extracellular	95.45	77.0
Zm00001d002395_P002	Maize	cytosol, extracellular	77.27	76.64
TraesCS5B01G461300.1	Wheat	cytosol	77.27	76.64
TraesCS5A01G452400.1	Wheat	nucleus	77.27	76.64
VIT_09s0054g00210.t01	Wine grape	cytosol	47.11	76.51
HORVU2Hr1G078780.1	Barley	cytosol	16.12	76.47
Zm00001d026254_P001	Maize	plastid	77.69	76.42
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	77.27	76.33
KXG24783	Sorghum	cytosol	77.27	76.33
OQU75620	Sorghum	cytosol	77.27	76.33
TraesCS5D01G462800.1	Wheat	cytosol, golgi	76.86	76.23
HORVU7Hr1G057320.1	Barley	cytosol	14.46	76.09
Os08t0234000-01	Rice	nucleus	76.86	75.92
HORVU5Hr1G108990.2	Barley	cytosol	77.27	75.71
TraesCS2A01G432600.1	Wheat	cytosol, unclear	76.03	75.41
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	76.03	75.41
KXG27062	Sorghum	cytosol	72.73	75.21
VIT_09s0054g00060.t01	Wine grape	cytosol	38.02	74.8
KRH12348	Soybean	endoplasmic reticulum, nucleus	83.88	74.63
TraesCS2D01G430500.1	Wheat	golgi	75.21	74.59
Zm00001d024373_P001	Maize	cytosol	76.03	74.49
VIT_09s0054g00090.t01	Wine grape	cytosol	40.91	73.33
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	26.86	73.03
VIT_09s0054g00030.t01	Wine grape	cytosol	45.87	73.03
Zm00001d030114_P001	Maize	cytosol	74.79	71.83
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	27.27	68.04
Zm00001d041838_P003	Maize	mitochondrion	33.88	65.6
KRH25929	Soybean	cytosol	23.14	64.37
HORVU2Hr1G100970.4	Barley	mitochondrion	75.62	62.67
VIT_00s2416g00010.t01	Wine grape	cytosol	19.42	61.04
KXG27000	Sorghum	plastid	66.53	57.5
OQU80131	Sorghum	cytosol	77.27	56.33
VIT_09s0054g00190.t01	Wine grape	cytosol	29.34	53.79
Bra008443.1-P	Field mustard	cytosol	40.91	37.64
Bra003583.1-P	Field mustard	cytosol	40.91	37.5
GSMUA_AchrUn_...	Banana	cytosol	9.5	29.11
HORVU5Hr1G109020.1	Barley	extracellular	8.26	27.03

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	EnsemblPlantsGene:Bra037665	EnsemblPlants:Bra037665.1	EnsemblPlants:Bra037665.1-P
ncoils:Coil	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	UniProt:M4F9A2	PFAM:PF00327
PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N
InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310
UniParc:UPI0002543E8A	SEG:seg	:	:	:	:

Description

AT2G44120 (E=6e-120) | 60S ribosomal protein L7 (RPL7C)

Coordinates

chrA04:-:18265821..18267014

Molecular Weight (calculated)

28054.6 Da

IEP (calculated)

10.581

GRAVY (calculated)

-0.513

Length

242 amino acids

Sequence
(BLAST)

001: MAESKVVVPE SVLKKIKREE EWALAKKQEA EAAKKKSVET RKLIFKRAEH YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATINMLRRV EPYVTYGYPN LKTVKELIYK RGYGKLNHQR IALTDNSIVN QGLGKHNIIC VEDLIPEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN

Best Arabidopsis Sequence Match ( AT2G44120.2 )
(BLAST)

001: MYVGEMAESK VVVPESVLKK IKRQEEWALA KKDEAVAAKK KSVEARKLIF KRAEQYAKEY AEKDNELIRL KREAKLKGGF YVDPEAKLLF IIRIRGINAI
101: DPKTKKILQL LRLRQIFNGV FLKVNKATVN MLRRVEPYVT YGYPNLKSVK ELIYKRGYGK LNHQRIALTD NSIVDQALGK HGIICVEDLI HEIMTVGPHF
201: KEANNFLWPF QLKAPLGGLK KKRNHYVEGG DAGNRENFIN ELVRRMN

Arabidopsis Description

Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.