Factsheet for VIT_09s0054g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95588	Canola	cytosol	20.73	94.44
VIT_09s0054g00140.t01	Wine grape	cytosol	71.14	94.09
VIT_11s0052g00290.t01	Wine grape	cytosol	91.46	91.84
VIT_09s0054g00060.t01	Wine grape	cytosol	45.53	91.06
VIT_09s0054g00210.t01	Wine grape	cytosol	54.88	90.6
VIT_09s0054g00090.t01	Wine grape	cytosol	49.59	90.37
VIT_00s2761g00010.t01	Wine grape	cytosol	18.7	90.2
VIT_00s1526g00010.t01	Wine grape	cytosol	19.51	88.89
VIT_09s0054g00030.t01	Wine grape	cytosol	54.47	88.16
Bra024895.1-P	Field mustard	cytosol	84.55	85.95
CDY40393	Canola	cytosol	84.15	85.54
CDY25941	Canola	cytosol	84.15	85.54
CDY17686	Canola	cytosol	84.15	85.54
Bra014334.1-P	Field mustard	cytosol	84.15	85.54
CDX77810	Canola	cytosol, extracellular	84.15	85.54
VIT_09s0054g00150.t01	Wine grape	cytosol	30.49	85.23
CDY37358	Canola	cytosol	83.74	85.12
AT2G01250.1	Thale cress	cytosol	83.74	85.12
Bra017461.1-P	Field mustard	cytosol	83.74	85.12
CDY41074	Canola	cytosol	83.33	84.71
PGSC0003DMT400075548	Potato	cytosol	82.52	84.58
AT3G13580.3	Thale cress	cytosol	83.33	84.02
PGSC0003DMT400053653	Potato	cytosol	82.93	83.27
PGSC0003DMT400051218	Potato	cytosol	81.71	83.06
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	81.71	83.06
CDY17884	Canola	cytosol, extracellular	81.3	82.64
Bra004806.1-P	Field mustard	cytosol	81.3	82.64
Bra037665.1-P	Field mustard	cytosol	80.49	81.82
AT2G44120.2	Thale cress	cytosol	82.11	81.78
Bra000341.1-P	Field mustard	cytosol	65.04	81.63
CDX83440	Canola	cytosol, extracellular	80.08	81.07
CDY30456	Canola	cytosol	81.3	77.82
CDY23419	Canola	extracellular	81.3	66.67
VIT_00s2416g00010.t01	Wine grape	cytosol	20.73	66.23
VIT_09s0054g00190.t01	Wine grape	cytosol	34.15	63.64
CDY01953	Canola	cytosol	36.18	62.24
VIT_09s0054g00070.t01	Wine grape	extracellular	30.89	61.29
VIT_09s0070g00130.t01	Wine grape	cytosol	52.85	52.85
CDX79781	Canola	extracellular	27.64	42.5
GSMUA_AchrUn_...	Banana	cytosol	10.16	31.65

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:100244696	wikigene:100244696	EntrezGene:100245039	wikigene:100245039	EntrezGene:100250265
wikigene:100250265	EntrezGene:100264368	wikigene:100264368	EntrezGene:100267352	wikigene:100267352	MapMan:17.1.2.1.5
Gene3D:3.30.1390.20	ProteinID:CBI18498	ProteinID:CBI18498.3	ncoils:Coil	UniProt:D7SS66	EMBL:FN594972
GO:GO:0000463	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023106	InterPro:IPR036919
InterPro:L30_ferredoxin-like_sf	EntrezGene:LOC100244696	wikigene:LOC100244696	EntrezGene:LOC100245039	wikigene:LOC100245039	EntrezGene:LOC100250265
wikigene:LOC100250265	EntrezGene:LOC100264368	wikigene:LOC100264368	EntrezGene:LOC100267352	wikigene:LOC100267352	PFAM:PF00327
PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N
InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGR:TC54358
TIGRFAMs:TIGR01310	UniParc:UPI0001BE12F0	ArrayExpress:VIT_09s0054g00010	EnsemblPlantsGene:VIT_09s0054g00010	EnsemblPlants:VIT_09s0054g00010.t01	unigene:Vvi.15145
RefSeq:XP_002263512	RefSeq:XP_002263512.2	RefSeq:XP_003632929	RefSeq:XP_003632929.1	RefSeq:XP_003632930	RefSeq:XP_003632930.1
RefSeq:XP_003632931	RefSeq:XP_003632931.1	RefSeq:XP_003632932	RefSeq:XP_003632932.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:20163264..20165453

Molecular Weight (calculated)

28692.3 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.711

Length

246 amino acids

Sequence
(BLAST)

001: MGEEDAKGGP VIPESVLKKQ KRNEEWTLAK KQEVEAKKKK NADNRKLIYS RAKQYAKEYE EQQKELIQLK REAKLKGGFY VDPEAKLLFM IRIRGINAMH
101: PKTRKILQLL RLRQIFNGVF LKVNKATMNM LHRVEPYVTY GYPNLKSVRE LIYKRGYGKL NKQRTALTDN SIVEQALGKF GIICMEDLIH EIMTVGPHFK
201: EANNFLWPFK LKAPLGGLKK KRNHYVEGGD AGNRENYINE LIRRMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.