Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s2416g00010.t01 | Wine grape | cytosol | 56.06 | 96.1 |
| VIT_00s2761g00010.t01 | Wine grape | cytosol | 37.12 | 96.08 |
| VIT_00s1526g00010.t01 | Wine grape | cytosol | 38.64 | 94.44 |
| VIT_09s0054g00060.t01 | Wine grape | cytosol | 62.12 | 66.67 |
| VIT_09s0054g00030.t01 | Wine grape | cytosol | 63.64 | 55.26 |
| VIT_09s0054g00210.t01 | Wine grape | cytosol | 62.12 | 55.03 |
| VIT_09s0054g00090.t01 | Wine grape | cytosol | 52.27 | 51.11 |
| CDY01953 | Canola | cytosol | 50.76 | 46.85 |
| VIT_09s0054g00010.t01 | Wine grape | cytosol | 63.64 | 34.15 |
| VIT_09s0054g00140.t01 | Wine grape | cytosol | 46.21 | 32.8 |
| VIT_11s0052g00290.t01 | Wine grape | cytosol | 59.09 | 31.84 |
| PGSC0003DMT400051218 | Potato | cytosol | 56.82 | 30.99 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 56.82 | 30.99 |
| PGSC0003DMT400075548 | Potato | cytosol | 56.06 | 30.83 |
| AT2G01250.1 | Thale cress | cytosol | 56.06 | 30.58 |
| CDX79781 | Canola | extracellular | 36.36 | 30.0 |
| AT3G13580.3 | Thale cress | cytosol | 55.3 | 29.92 |
| PGSC0003DMT400053653 | Potato | cytosol | 55.3 | 29.8 |
| CDY41074 | Canola | cytosol | 54.55 | 29.75 |
| CDY40393 | Canola | cytosol | 54.55 | 29.75 |
| CDY37358 | Canola | cytosol | 54.55 | 29.75 |
| CDY25941 | Canola | cytosol | 54.55 | 29.75 |
| Bra004806.1-P | Field mustard | cytosol | 54.55 | 29.75 |
| CDY17884 | Canola | cytosol, extracellular | 54.55 | 29.75 |
| CDY17686 | Canola | cytosol | 54.55 | 29.75 |
| Bra014334.1-P | Field mustard | cytosol | 54.55 | 29.75 |
| CDX77810 | Canola | cytosol, extracellular | 54.55 | 29.75 |
| Bra024895.1-P | Field mustard | cytosol | 54.55 | 29.75 |
| Bra017461.1-P | Field mustard | cytosol | 54.55 | 29.75 |
| Bra037665.1-P | Field mustard | cytosol | 53.79 | 29.34 |
| CDX83440 | Canola | cytosol, extracellular | 53.03 | 28.81 |
| Bra000341.1-P | Field mustard | cytosol | 42.42 | 28.57 |
| AT2G44120.2 | Thale cress | cytosol | 53.03 | 28.34 |
| CDY30456 | Canola | cytosol | 54.55 | 28.02 |
| GSMUA_AchrUn_... | Banana | cytosol | 15.15 | 25.32 |
| CDY23419 | Canola | extracellular | 54.55 | 24.0 |
| VIT_09s0070g00130.t01 | Wine grape | cytosol | 31.06 | 16.67 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 7.58 | 11.36 |
| CDX95588 | Canola | cytosol | 4.55 | 11.11 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 6.82 | 7.26 |
Protein Annotations
| MapMan:35.1 | ProteinID:CBI18485 | ProteinID:CBI18485.3 | UniProt:D7SS53 | EMBL:FN594972 | GO:GO:0000463 |
| GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | PFAM:PF00327 |
| PFAM:PF08079 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | InterPro:Ribosomal_L30_N | InterPro:Ribosomal_L30_ferredoxin-like | SUPFAM:SSF55129 |
| UniParc:UPI0001BE12A3 | ArrayExpress:VIT_09s0054g00190 | EnsemblPlantsGene:VIT_09s0054g00190 | EnsemblPlants:VIT_09s0054g00190.t01 | SEG:seg | : |
Description
No Description!
Coordinates
chr9:+:20391122..20391704
Molecular Weight (calculated)
15482.3 Da
IEP (calculated)
10.127
GRAVY (calculated)
-0.302
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIGKKQEVE AKKKKNAENW KLIYSRAKQY AKEYEEQQME PTQLKHEAKL KGGFYVDPEV KLLFIIRIRG INAMHPKTRK ILQLLCLRQV RCQTIASGNE
101: KYMAVINLIP CFVLDSVKFL LISYIDIPLQ RI
101: KYMAVINLIP CFVLDSVKFL LISYIDIPLQ RI
001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QPTTSFGHSS LRHH
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QPTTSFGHSS LRHH
Arabidopsis Description
RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.