CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000341.1-P	Field mustard	cytosol	79.42	98.47
CDX95588	Canola	cytosol	21.81	98.15
CDY17884	Canola	cytosol, extracellular	94.24	94.63
OQU75637	Sorghum	cytosol	20.16	90.74
CDY30456	Canola	cytosol	95.06	89.88
AT2G44120.2	Thale cress	cytosol	90.95	89.47
CDX77810	Canola	cytosol, extracellular	88.07	88.43
CDY40393	Canola	cytosol	88.07	88.43
CDY17686	Canola	cytosol	88.07	88.43
CDY37358	Canola	cytosol	87.65	88.02
CDY25941	Canola	cytosol	87.24	87.6
CDY41074	Canola	cytosol	87.24	87.6
VIT_09s0054g00140.t01	Wine grape	cytosol	65.02	84.95
KRH37351	Soybean	endoplasmic reticulum	82.3	82.64
PGSC0003DMT400075548	Potato	cytosol	81.48	82.5
VIT_00s2761g00010.t01	Wine grape	cytosol	17.28	82.35
KRH47287	Soybean	nucleus	82.3	82.3
KRH44630	Soybean	cytosol	81.89	81.89
PGSC0003DMT400051218	Potato	cytosol	81.48	81.82
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	81.48	81.82
VIT_09s0054g00010.t01	Wine grape	cytosol	81.07	80.08
PGSC0003DMT400053653	Potato	cytosol	80.66	80.0
VIT_11s0052g00290.t01	Wine grape	cytosol	79.84	79.18
Os04t0605900-01	Rice	plastid	78.6	78.28
VIT_00s1526g00010.t01	Wine grape	cytosol	17.28	77.78
Os08t0234000-01	Rice	nucleus	77.37	76.73
TraesCS5B01G461300.1	Wheat	cytosol	76.95	76.64
TraesCS5A01G452400.1	Wheat	nucleus	76.95	76.64
Zm00001d002395_P002	Maize	cytosol, extracellular	76.95	76.64
VIT_09s0054g00210.t01	Wine grape	cytosol	46.91	76.51
Zm00001d026254_P001	Maize	plastid	77.37	76.42
TraesCS5D01G462800.1	Wheat	cytosol, golgi	76.54	76.23
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	76.54	75.92
OQU75620	Sorghum	cytosol	76.54	75.92
KXG24783	Sorghum	cytosol	76.54	75.92
HORVU5Hr1G108990.2	Barley	cytosol	76.95	75.71
KXG27062	Sorghum	cytosol	72.84	75.64
TraesCS2A01G432600.1	Wheat	cytosol, unclear	75.72	75.41
CDY23419	Canola	extracellular	93.0	75.33
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	75.31	75.0
TraesCS2D01G430500.1	Wheat	golgi	74.9	74.59
HORVU2Hr1G078780.1	Barley	cytosol	15.64	74.51
KRH12348	Soybean	endoplasmic reticulum, nucleus	83.13	74.26
Zm00001d024373_P001	Maize	cytosol	75.31	74.09
VIT_09s0054g00090.t01	Wine grape	cytosol	41.15	74.07
VIT_09s0054g00060.t01	Wine grape	cytosol	37.45	73.98
HORVU7Hr1G057320.1	Barley	cytosol	13.99	73.91
VIT_09s0054g00030.t01	Wine grape	cytosol	45.68	73.03
Zm00001d030114_P001	Maize	cytosol	74.9	72.22
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	25.93	70.79
CDY01953	Canola	cytosol	39.51	67.13
KRH25929	Soybean	cytosol	23.87	66.67
Zm00001d041838_P003	Maize	mitochondrion	34.16	66.4
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	26.34	65.98
HORVU2Hr1G100970.4	Barley	mitochondrion	75.31	62.67
VIT_00s2416g00010.t01	Wine grape	cytosol	19.34	61.04
KXG27000	Sorghum	plastid	66.67	57.86
OQU80131	Sorghum	cytosol	76.54	56.02
CDX79781	Canola	extracellular	34.98	53.12
VIT_09s0054g00190.t01	Wine grape	cytosol	28.81	53.03
CDX79356	Canola	cytosol	39.92	37.74
CDY66947	Canola	cytosol	39.92	36.88
CDY53223	Canola	cytosol	39.92	36.88
CDX67965	Canola	cytosol	39.51	36.36
CDX67964	Canola	cytosol	22.63	30.73
GSMUA_AchrUn_...	Banana	cytosol	9.05	27.85
HORVU5Hr1G109020.1	Barley	extracellular	8.23	27.03

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	EnsemblPlants:CDX83440	ProteinID:CDX83440	ProteinID:CDX83440.1
ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00139018001	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327
PFAM:PF08079	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like
InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0004EEC827	SEG:seg

Description

BnaA03g20660D

Coordinates

chrLK031832:+:1575769..1577082

Molecular Weight (calculated)

28147.7 Da

IEP (calculated)

10.454

GRAVY (calculated)

-0.497

Length

243 amino acids

Sequence
(BLAST)

001: MADSKVVVPE SVLKKIKREE EWALAMKQEA EAAKKKSVET RKLIFKRAEQ YAKEYAQKDN ELIRLKREAK LKGGFYVDPE GKLLFIIRIR GINAIDPKTK
101: KILQLLRLKQ KIFNGVFLKV NKATINMLRR VEPYVTYGYP NLKSVRELIY KRGYGKLNHQ RIALTDNSIV AEGLGKHEII CVEDLIHEIM TVGPHFKEAN
201: NFLWPFQLKA PLGGLEKKRN HYVEGGDAGN RENFINELVR RMN

Best Arabidopsis Sequence Match ( AT2G44120.1 )
(BLAST)

001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN

Arabidopsis Description

Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.