Factsheet for VIT_11s0052g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95588	Canola	cytosol	20.41	92.59
VIT_09s0054g00140.t01	Wine grape	cytosol	70.2	92.47
VIT_09s0054g00010.t01	Wine grape	cytosol	91.84	91.46
VIT_00s2761g00010.t01	Wine grape	cytosol	18.78	90.2
VIT_00s1526g00010.t01	Wine grape	cytosol	19.59	88.89
VIT_09s0054g00210.t01	Wine grape	cytosol	53.06	87.25
Bra024895.1-P	Field mustard	cytosol	84.9	85.95
CDY17686	Canola	cytosol	84.49	85.54
CDY40393	Canola	cytosol	84.49	85.54
CDY25941	Canola	cytosol	84.49	85.54
CDX77810	Canola	cytosol, extracellular	84.49	85.54
Bra014334.1-P	Field mustard	cytosol	84.49	85.54
PGSC0003DMT400075548	Potato	cytosol	83.67	85.42
VIT_09s0054g00060.t01	Wine grape	cytosol	42.86	85.37
CDY37358	Canola	cytosol	84.08	85.12
Bra017461.1-P	Field mustard	cytosol	84.08	85.12
PGSC0003DMT400053653	Potato	cytosol	84.9	84.9
CDY41074	Canola	cytosol	83.67	84.71
AT2G01250.1	Thale cress	cytosol	83.67	84.71
AT3G13580.3	Thale cress	cytosol	83.67	84.02
VIT_09s0054g00090.t01	Wine grape	cytosol	46.12	83.7
VIT_09s0054g00030.t01	Wine grape	cytosol	51.84	83.55
PGSC0003DMT400051218	Potato	cytosol	82.04	83.06
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	82.04	83.06
CDY17884	Canola	cytosol, extracellular	81.22	82.23
Bra004806.1-P	Field mustard	cytosol	81.22	82.23
VIT_09s0054g00150.t01	Wine grape	cytosol	29.39	81.82
Bra037665.1-P	Field mustard	cytosol	80.41	81.41
AT2G44120.2	Thale cress	cytosol	82.04	81.38
Bra000341.1-P	Field mustard	cytosol	64.08	80.1
CDX83440	Canola	cytosol, extracellular	79.18	79.84
CDY30456	Canola	cytosol	81.22	77.43
KRH25929	Soybean	cytosol	26.12	73.56
VIT_00s2416g00010.t01	Wine grape	cytosol	20.82	66.23
CDY23419	Canola	extracellular	80.41	65.67
CDY01953	Canola	cytosol	37.14	63.64
VIT_09s0054g00070.t01	Wine grape	extracellular	30.2	59.68
VIT_09s0054g00190.t01	Wine grape	cytosol	31.84	59.09
VIT_09s0070g00130.t01	Wine grape	cytosol	55.1	54.88
CDX79781	Canola	extracellular	27.76	42.5
GSMUA_AchrUn_...	Banana	cytosol	10.2	31.65

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:100242794	wikigene:100242794	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ProteinID:CCB44678
ProteinID:CCB44678.1	ncoils:Coil	UniProt:F6GXJ2	EMBL:FN594964	GO:GO:0000463	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	EntrezGene:LOC100242794
wikigene:LOC100242794	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16
InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGR:TC52246	TIGRFAMs:TIGR01310	UniParc:UPI00015CC4B7	ArrayExpress:VIT_11s0052g00290	EnsemblPlantsGene:VIT_11s0052g00290
EnsemblPlants:VIT_11s0052g00290.t01	RefSeq:XP_002262697	RefSeq:XP_002262697.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:17467726..17471977

Molecular Weight (calculated)

28491.2 Da

IEP (calculated)

10.575

GRAVY (calculated)

-0.558

Length

245 amino acids

Sequence
(BLAST)

001: MGGEEVKGVV VPESVLKKRK RSEEWALAKK QELECTKKKN ATNRTLIYVR AKQYAKEYDE QQKELIQLKR EAKLKGGFYV SPEAKLLFII RIRGINAMHP
101: KTRKILQLLR LRQIFNGVFL KVNKATMNML HRVEPYVTYG YPNLKSVREL IYKRGYGKLN KQRTALTDNS IIEQALGKFG IICIEDLIHE IMTVGPHFKE
201: ANNFLWPFKL KAPLGGLKKK RNHYVEGGDA GNREDYINEL IRRMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.