Factsheet for Bra024895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77810	Canola	cytosol, extracellular	99.17	99.17
CDY17686	Canola	cytosol	99.17	99.17
CDY37358	Canola	cytosol	98.76	98.76
Bra014334.1-P	Field mustard	cytosol	98.76	98.76
Bra017461.1-P	Field mustard	cytosol	97.52	97.52
AT2G01250.1	Thale cress	cytosol	95.87	95.87
OQU75637	Sorghum	cytosol	20.66	92.59
Bra004806.1-P	Field mustard	cytosol	90.5	90.5
Bra037665.1-P	Field mustard	cytosol	89.67	89.67
Bra000341.1-P	Field mustard	cytosol	70.66	87.24
VIT_09s0054g00140.t01	Wine grape	cytosol	66.53	86.56
KRH44630	Soybean	cytosol	86.36	86.01
KRH47287	Soybean	nucleus	86.36	86.01
VIT_11s0052g00290.t01	Wine grape	cytosol	85.95	84.9
VIT_09s0054g00010.t01	Wine grape	cytosol	85.95	84.55
VIT_00s2761g00010.t01	Wine grape	cytosol	17.77	84.31
PGSC0003DMT400051218	Potato	cytosol	84.3	84.3
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	84.3	84.3
PGSC0003DMT400075548	Potato	cytosol	83.47	84.17
KRH37351	Soybean	endoplasmic reticulum	83.47	83.47
PGSC0003DMT400053653	Potato	cytosol	82.64	81.63
VIT_09s0054g00210.t01	Wine grape	cytosol	49.17	79.87
VIT_00s1526g00010.t01	Wine grape	cytosol	17.77	79.63
VIT_09s0054g00060.t01	Wine grape	cytosol	39.67	78.05
VIT_09s0054g00090.t01	Wine grape	cytosol	43.39	77.78
HORVU2Hr1G078780.1	Barley	cytosol	16.12	76.47
VIT_09s0054g00030.t01	Wine grape	cytosol	47.93	76.32
HORVU7Hr1G057320.1	Barley	cytosol	14.46	76.09
Zm00001d002395_P002	Maize	cytosol, extracellular	76.45	75.82
Os04t0605900-01	Rice	plastid	76.45	75.82
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	76.45	75.51
KXG24783	Sorghum	cytosol	76.45	75.51
OQU75620	Sorghum	cytosol	76.45	75.51
TraesCS5D01G462800.1	Wheat	cytosol, golgi	76.03	75.41
TraesCS5B01G461300.1	Wheat	cytosol	76.03	75.41
TraesCS2A01G432600.1	Wheat	cytosol, unclear	76.03	75.41
TraesCS5A01G452400.1	Wheat	nucleus	76.03	75.41
Os08t0234000-01	Rice	nucleus	76.03	75.1
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	75.62	75.0
Zm00001d026254_P001	Maize	plastid	76.03	74.8
TraesCS2D01G430500.1	Wheat	golgi	75.21	74.59
Zm00001d024373_P001	Maize	cytosol	76.03	74.49
KRH12348	Soybean	endoplasmic reticulum, nucleus	83.06	73.9
HORVU5Hr1G108990.2	Barley	cytosol	75.21	73.68
KXG27062	Sorghum	cytosol	70.66	73.08
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	26.45	71.91
Zm00001d030114_P001	Maize	cytosol	73.14	70.24
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	26.86	67.01
KRH25929	Soybean	cytosol	23.97	66.67
Zm00001d041838_P003	Maize	mitochondrion	32.23	62.4
HORVU2Hr1G100970.4	Barley	mitochondrion	75.21	62.33
VIT_00s2416g00010.t01	Wine grape	cytosol	19.01	59.74
KXG27000	Sorghum	plastid	64.88	56.07
OQU80131	Sorghum	cytosol	76.45	55.72
VIT_09s0054g00190.t01	Wine grape	cytosol	29.75	54.55
Bra008443.1-P	Field mustard	cytosol	43.39	39.92
Bra003583.1-P	Field mustard	cytosol	43.39	39.77
GSMUA_AchrUn_...	Banana	cytosol	9.92	30.38
HORVU5Hr1G109020.1	Barley	extracellular	8.68	28.38

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	EnsemblPlantsGene:Bra024895	EnsemblPlants:Bra024895.1	EnsemblPlants:Bra024895.1-P
ncoils:Coil	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	UniProt:M4E7Y9	PFAM:PF00327
PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N
InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310
UniParc:UPI000253F9B1	SEG:seg	:	:	:	:

Description

AT2G01250 (E=2e-120) | 60S ribosomal protein L7 (RPL7B)

Coordinates

chrA06:+:24155809..24156982

Molecular Weight (calculated)

27920.3 Da

IEP (calculated)

10.627

GRAVY (calculated)

-0.562

Length

242 amino acids

Sequence
(BLAST)

001: MAESKGVVPE SVLKKRKREE EWALAKKQST EAAKKTNAAN RKLIYKRAEQ YAKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR VALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Best Arabidopsis Sequence Match ( AT2G01250.1 )
(BLAST)

001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN

Arabidopsis Description

RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.