Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0054g00060.t01 | Wine grape | cytosol | 77.18 | 93.5 |
| VIT_00s2761g00010.t01 | Wine grape | cytosol | 30.87 | 90.2 |
| VIT_09s0054g00030.t01 | Wine grape | cytosol | 91.95 | 90.13 |
| VIT_00s1526g00010.t01 | Wine grape | cytosol | 32.21 | 88.89 |
| VIT_09s0054g00090.t01 | Wine grape | cytosol | 68.46 | 75.56 |
| VIT_00s2416g00010.t01 | Wine grape | cytosol | 32.89 | 63.64 |
| VIT_09s0054g00190.t01 | Wine grape | cytosol | 55.03 | 62.12 |
| VIT_09s0054g00140.t01 | Wine grape | cytosol | 69.13 | 55.38 |
| VIT_09s0054g00010.t01 | Wine grape | cytosol | 90.6 | 54.88 |
| VIT_11s0052g00290.t01 | Wine grape | cytosol | 87.25 | 53.06 |
| PGSC0003DMT400075548 | Potato | cytosol | 80.54 | 50.0 |
| AT2G01250.1 | Thale cress | cytosol | 80.54 | 49.59 |
| CDY40393 | Canola | cytosol | 79.87 | 49.17 |
| CDY41074 | Canola | cytosol | 79.87 | 49.17 |
| CDY37358 | Canola | cytosol | 79.87 | 49.17 |
| CDY25941 | Canola | cytosol | 79.87 | 49.17 |
| CDY17686 | Canola | cytosol | 79.87 | 49.17 |
| Bra014334.1-P | Field mustard | cytosol | 79.87 | 49.17 |
| Bra017461.1-P | Field mustard | cytosol | 79.87 | 49.17 |
| Bra024895.1-P | Field mustard | cytosol | 79.87 | 49.17 |
| CDX77810 | Canola | cytosol, extracellular | 79.87 | 49.17 |
| AT3G13580.3 | Thale cress | cytosol | 79.19 | 48.36 |
| PGSC0003DMT400051218 | Potato | cytosol | 77.85 | 47.93 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 77.85 | 47.93 |
| PGSC0003DMT400053653 | Potato | cytosol | 78.52 | 47.76 |
| CDY17884 | Canola | cytosol, extracellular | 77.18 | 47.52 |
| Bra004806.1-P | Field mustard | cytosol | 77.18 | 47.52 |
| Bra037665.1-P | Field mustard | cytosol | 76.51 | 47.11 |
| CDX83440 | Canola | cytosol, extracellular | 76.51 | 46.91 |
| CDY01953 | Canola | cytosol | 44.97 | 46.85 |
| AT2G44120.2 | Thale cress | cytosol | 76.51 | 46.15 |
| CDY30456 | Canola | cytosol | 77.18 | 44.75 |
| Bra000341.1-P | Field mustard | cytosol | 53.02 | 40.31 |
| CDY23419 | Canola | extracellular | 76.51 | 38.0 |
| CDX79781 | Canola | extracellular | 34.23 | 31.88 |
| GSMUA_AchrUn_... | Banana | cytosol | 15.44 | 29.11 |
| VIT_09s0070g00130.t01 | Wine grape | cytosol | 44.97 | 27.24 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 3.36 | 4.03 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 2.01 | 3.41 |
| CDX95588 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | ProteinID:CBI18484 | ProteinID:CBI18484.3 | ncoils:Coil | UniProt:D7SS52 |
| EMBL:FN594972 | GO:GO:0000463 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR036919 |
| InterPro:L30_ferredoxin-like_sf | PFAM:PF00327 | PFAM:PF08079 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | InterPro:Ribosomal_L30_N |
| InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk_arc | SUPFAM:SSF55129 | TIGR:TC60873 | UniParc:UPI0001BE12A2 | ArrayExpress:VIT_09s0054g00210 |
| EnsemblPlantsGene:VIT_09s0054g00210 | EnsemblPlants:VIT_09s0054g00210.t01 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr9:+:20455961..20458804
Molecular Weight (calculated)
17531.7 Da
IEP (calculated)
10.556
GRAVY (calculated)
-0.668
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIGKKQEVE AKKKKNAENR KLIYSRAKQY AKEYDEQQKE LIQLKHEAKL KGGFYVDPEV KLLFIIRIRG INAMHSKMTK ILQLLRLRQI FNGVFLKVNK
101: ATMNMLHRDE PCVTYGYPNL KSVRELIYKR GYGKLNKQRT ALTDNSIVE
101: ATMNMLHRDE PCVTYGYPNL KSVRELIYKR GYGKLNKQRT ALTDNSIVE
001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QPTTSFGHSS LRHH
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QPTTSFGHSS LRHH
Arabidopsis Description
RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.