Factsheet for PGSC0003DMT400075548

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT2G01250.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95588	Canola	cytosol	21.25	94.44
OQU75637	Sorghum	cytosol	20.42	90.74
PGSC0003DMT400053653	Potato	cytosol	91.67	89.8
PGSC0003DMT400051218	Potato	cytosol	90.0	89.26
VIT_09s0054g00140.t01	Wine grape	cytosol	65.42	84.41
Bra017461.1-P	Field mustard	cytosol	84.58	83.88
CDY25941	Canola	cytosol	84.58	83.88
VIT_11s0052g00290.t01	Wine grape	cytosol	85.42	83.67
CDY41074	Canola	cytosol	84.17	83.47
CDY40393	Canola	cytosol	84.17	83.47
CDY37358	Canola	cytosol	84.17	83.47
CDY17686	Canola	cytosol	84.17	83.47
AT2G01250.1	Thale cress	cytosol	84.17	83.47
CDX77810	Canola	cytosol, extracellular	84.17	83.47
Bra024895.1-P	Field mustard	cytosol	84.17	83.47
Bra014334.1-P	Field mustard	cytosol	84.17	83.47
Bra037665.1-P	Field mustard	cytosol	83.75	83.06
AT3G13580.3	Thale cress	cytosol	84.17	82.79
CDY17884	Canola	cytosol, extracellular	83.33	82.64
Bra004806.1-P	Field mustard	cytosol	83.33	82.64
AT2G44120.2	Thale cress	cytosol	85.0	82.59
VIT_09s0054g00010.t01	Wine grape	cytosol	84.58	82.52
VIT_00s2761g00010.t01	Wine grape	cytosol	17.5	82.35
KRH37351	Soybean	endoplasmic reticulum	82.92	82.23
Bra000341.1-P	Field mustard	cytosol	67.08	82.14
CDX83440	Canola	cytosol, extracellular	82.5	81.48
VIT_09s0054g00210.t01	Wine grape	cytosol	50.0	80.54
VIT_09s0054g00060.t01	Wine grape	cytosol	41.25	80.49
HORVU2Hr1G078780.1	Barley	cytosol	17.08	80.39
VIT_00s1526g00010.t01	Wine grape	cytosol	17.92	79.63
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	80.0	78.69
TraesCS2A01G432600.1	Wheat	cytosol, unclear	80.0	78.69
CDY30456	Canola	cytosol	84.17	78.6
Zm00001d002395_P002	Maize	cytosol, extracellular	79.17	77.87
TraesCS5D01G462800.1	Wheat	cytosol, golgi	78.75	77.46
TraesCS5B01G461300.1	Wheat	cytosol	78.75	77.46
TraesCS5A01G452400.1	Wheat	nucleus	78.75	77.46
Os04t0605900-01	Rice	plastid	78.75	77.46
VIT_09s0054g00090.t01	Wine grape	cytosol	43.33	77.04
VIT_09s0054g00030.t01	Wine grape	cytosol	48.75	76.97
Zm00001d026254_P001	Maize	plastid	78.75	76.83
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	78.33	76.73
Os08t0234000-01	Rice	nucleus	78.33	76.73
OQU75620	Sorghum	cytosol	77.92	76.33
KXG24783	Sorghum	cytosol	77.92	76.33
TraesCS2D01G430500.1	Wheat	golgi	77.08	75.82
HORVU5Hr1G108990.2	Barley	cytosol	77.92	75.71
KXG27062	Sorghum	cytosol	73.75	75.64
Zm00001d024373_P001	Maize	cytosol	77.08	74.9
KRH12348	Soybean	endoplasmic reticulum, nucleus	84.58	74.63
HORVU7Hr1G057320.1	Barley	cytosol	14.17	73.91
Zm00001d030114_P001	Maize	cytosol	75.83	72.22
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	26.67	71.91
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	27.92	69.07
CDY23419	Canola	extracellular	84.17	67.33
Zm00001d041838_P003	Maize	mitochondrion	35.0	67.2
HORVU2Hr1G100970.4	Barley	mitochondrion	78.33	64.38
CDY01953	Canola	cytosol	36.67	61.54
VIT_00s2416g00010.t01	Wine grape	cytosol	19.17	59.74
KXG27000	Sorghum	plastid	67.92	58.21
OQU80131	Sorghum	cytosol	77.92	56.33
VIT_09s0054g00190.t01	Wine grape	cytosol	30.83	56.06
PGSC0003DMT400073431	Potato	cytosol	47.92	46.75
PGSC0003DMT400036807	Potato	cytosol	45.83	44.72
CDX79781	Canola	extracellular	29.17	43.75
GSMUA_AchrUn_...	Banana	cytosol	10.83	32.91
HORVU5Hr1G109020.1	Barley	extracellular	7.5	24.32

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:102587452	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ncoils:Coil	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	UniProt:M1CVC9	PFAM:PF00327	PFAM:PF08079	EnsemblPlantsGene:PGSC0003DMG400029378
PGSC:PGSC0003DMG400029378	EnsemblPlants:PGSC0003DMT400075548	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS
InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129
TIGRFAMs:TIGR01310	UniParc:UPI000295B788	RefSeq:XP_006342481.1	:	:	:

Description

Thaliana 60S ribosomal protein L7 [Source:PGSC_GENE;Acc:PGSC0003DMG400029378]

Coordinates

chr12:+:57976621..57979484

Molecular Weight (calculated)

27805.2 Da

IEP (calculated)

10.599

GRAVY (calculated)

-0.610

Length

240 amino acids

Sequence
(BLAST)

001: MGETPVPESV LKKQKRSEEW ALAKKQELES AKKKNAENRK LIYNRAKLYA KEYAEQDKEL IRLKREARLK GGFYVDPEAK LLFIIRIRGI NAMPPQTKKI
101: LQLLRLRQIF NGVFLKVNKA TVNMLHRVEP YVTYGYPNLK SVRELIYKRG YGKLDKQRIP LTDNSVIEQG LGKHGIICAE DLVHEIMTVG PSFKQANNFL
201: WPFQLKAPLG GLKKKRNHYV EGGDAGNREN FINELIRRMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.