Factsheet for Zm00001d026254_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	Zm00001d004812_P002	AT4G09570.1	19130088
AT2G01250.1	Zm00001d023560_P002	AT4G09570.1	19130088
AT2G01250.1	Zm00001d053016_P002	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002395_P002	Maize	cytosol, extracellular	95.94	96.72
Zm00001d030114_P001	Maize	cytosol	95.53	93.25
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	92.68	93.06
Os04t0605900-01	Rice	plastid	91.87	92.62
CDX95588	Canola	cytosol	20.33	92.59
Zm00001d024373_P001	Maize	cytosol	92.28	91.9
TraesCS5A01G452400.1	Wheat	nucleus	89.43	90.16
TraesCS5B01G461300.1	Wheat	cytosol	89.43	90.16
TraesCS5D01G462800.1	Wheat	cytosol, golgi	89.02	89.75
HORVU5Hr1G108990.2	Barley	cytosol	89.84	89.47
TraesCS2A01G432600.1	Wheat	cytosol, unclear	86.18	86.89
TraesCS2D01G430500.1	Wheat	golgi	85.77	86.48
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	85.77	86.48
HORVU2Hr1G078780.1	Barley	cytosol	17.89	86.27
GSMUA_Achr10P...	Banana	cytosol	82.52	83.2
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	30.08	83.15
GSMUA_Achr11P...	Banana	cytosol	82.11	82.79
GSMUA_Achr4P05780_001	Banana	cytosol	82.11	82.79
KRH47287	Soybean	nucleus	78.46	79.42
KRH44630	Soybean	cytosol	78.46	79.42
PGSC0003DMT400075548	Potato	cytosol	76.83	78.75
AT2G01250.1	Thale cress	cytosol	77.24	78.51
CDY17884	Canola	cytosol, extracellular	77.24	78.51
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	77.24	78.51
PGSC0003DMT400051218	Potato	cytosol	77.24	78.51
Bra004806.1-P	Field mustard	cytosol	77.24	78.51
VIT_09s0054g00150.t01	Wine grape	cytosol	28.05	78.41
Bra037665.1-P	Field mustard	cytosol	76.42	77.69
KRH37351	Soybean	endoplasmic reticulum	76.42	77.69
CDX83440	Canola	cytosol, extracellular	76.42	77.37
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	30.49	77.32
Bra017461.1-P	Field mustard	cytosol	76.02	77.27
CDY37358	Canola	cytosol	76.02	77.27
PGSC0003DMT400053653	Potato	cytosol	76.83	77.14
Bra000341.1-P	Field mustard	cytosol	61.38	77.04
CDY17686	Canola	cytosol	75.61	76.86
CDX77810	Canola	cytosol, extracellular	75.61	76.86
CDY25941	Canola	cytosol	75.61	76.86
CDY40393	Canola	cytosol	75.61	76.86
Bra014334.1-P	Field mustard	cytosol	75.61	76.86
CDY41074	Canola	cytosol	75.61	76.86
AT3G13580.3	Thale cress	cytosol	76.02	76.64
Bra024895.1-P	Field mustard	cytosol	74.8	76.03
Zm00001d041838_P003	Maize	mitochondrion	38.21	75.2
AT2G44120.2	Thale cress	cytosol	74.8	74.49
CDY30456	Canola	cytosol	77.24	73.93
HORVU2Hr1G100970.4	Barley	mitochondrion	86.18	72.6
KXG27000	Sorghum	plastid	82.11	72.14
KRH12348	Soybean	endoplasmic reticulum, nucleus	76.83	69.49
GSMUA_Achr4P12660_001	Banana	cytosol	81.3	68.97
KRH25929	Soybean	cytosol	22.76	64.37
CDY23419	Canola	extracellular	76.02	62.33
CDY01953	Canola	cytosol	32.11	55.24
VIT_09s0054g00070.t01	Wine grape	extracellular	27.64	54.84
CDX79781	Canola	extracellular	25.61	39.38
Zm00001d031703_P001	Maize	cytosol, plasma membrane	40.65	38.17
Zm00001d052719_P002	Maize	cytosol	39.84	37.4

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:A0A1D6JDP4	ProteinID:AQK45935.1	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524
PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk
InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0008458954	EnsemblPlantsGene:Zm00001d026254	EnsemblPlants:Zm00001d026254_P001
EnsemblPlants:Zm00001d026254_T001	SEG:seg	:	:	:	:

Description

60S ribosomal protein L7-2

Coordinates

chr10:+:142134479..142136691

Molecular Weight (calculated)

28677.4 Da

IEP (calculated)

10.745

GRAVY (calculated)

-0.591

Length

246 amino acids

Sequence
(BLAST)

001: MQMSSVASKV AVPESVLRKR KREEQWATEK KEKALVEKKK SIESRKLIFT RAKQYAEEYD AQEKELVQLK REARLKGGFY VSPEAKLLFV VRIRGINAMH
101: PKTRKILQLL RLRQIFNGVF LKVNKATINM LRRVEPYVAY GYPNLKSVRE LIYKRGYGKL NKQRIPLSNN QVIEEGLGKH NIICIEDLVH EIMTVGPHFK
201: EANNFLWPFK LKAPLGGLKK KRNHYVEGGD AGNRENYINE LIKRMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.