CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	KRG91803	AT4G09570.1	19130088
AT2G01250.1	KRH34983	AT4G09570.1	19130088
AT2G01250.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44630	Soybean	cytosol	97.53	97.53
OQU75637	Sorghum	cytosol	21.4	96.3
CDX95588	Canola	cytosol	20.58	92.59
KRH37351	Soybean	endoplasmic reticulum	87.24	87.6
CDY40393	Canola	cytosol	86.42	86.78
CDY17686	Canola	cytosol	86.42	86.78
Bra014334.1-P	Field mustard	cytosol	86.42	86.78
CDX77810	Canola	cytosol, extracellular	86.42	86.78
CDY37358	Canola	cytosol	86.01	86.36
CDY25941	Canola	cytosol	86.01	86.36
AT2G01250.1	Thale cress	cytosol	86.01	86.36
Bra024895.1-P	Field mustard	cytosol	86.01	86.36
Bra017461.1-P	Field mustard	cytosol	86.01	86.36
CDY41074	Canola	cytosol	85.6	85.95
AT3G13580.3	Thale cress	cytosol	85.19	84.84
Bra004806.1-P	Field mustard	cytosol	83.95	84.3
CDY17884	Canola	cytosol, extracellular	83.95	84.3
Bra037665.1-P	Field mustard	cytosol	83.13	83.47
Bra000341.1-P	Field mustard	cytosol	67.08	83.16
AT2G44120.2	Thale cress	cytosol	84.36	83.0
CDX83440	Canola	cytosol, extracellular	82.3	82.3
Zm00001d002395_P002	Maize	cytosol, extracellular	80.25	79.92
Os04t0605900-01	Rice	plastid	80.25	79.92
CDY30456	Canola	cytosol	83.95	79.38
Os08t0234000-01	Rice	nucleus	79.84	79.18
KRH12348	Soybean	endoplasmic reticulum, nucleus	88.48	79.04
OQU75620	Sorghum	cytosol	79.42	78.78
KXG24783	Sorghum	cytosol	79.42	78.78
Zm00001d026254_P001	Maize	plastid	79.42	78.46
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	79.01	78.37
TraesCS5B01G461300.1	Wheat	cytosol	78.19	77.87
TraesCS5A01G452400.1	Wheat	nucleus	78.19	77.87
KXG27062	Sorghum	cytosol	74.9	77.78
TraesCS2A01G432600.1	Wheat	cytosol, unclear	77.78	77.46
TraesCS5D01G462800.1	Wheat	cytosol, golgi	77.78	77.46
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	77.37	77.05
Zm00001d024373_P001	Maize	cytosol	78.19	76.92
HORVU5Hr1G108990.2	Barley	cytosol	77.37	76.11
KRH25929	Soybean	cytosol	27.16	75.86
TraesCS2D01G430500.1	Wheat	golgi	76.13	75.82
Zm00001d030114_P001	Maize	cytosol	77.37	74.6
HORVU2Hr1G078780.1	Barley	cytosol	15.64	74.51
HORVU7Hr1G057320.1	Barley	cytosol	13.58	71.74
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	25.1	68.54
CDY23419	Canola	extracellular	82.3	66.67
CDY01953	Canola	cytosol	38.27	65.03
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	25.93	64.95
HORVU2Hr1G100970.4	Barley	mitochondrion	76.54	63.7
Zm00001d041838_P003	Maize	mitochondrion	32.1	62.4
KXG27000	Sorghum	plastid	68.31	59.29
OQU80131	Sorghum	cytosol	79.42	58.13
KRG94901	Soybean	nucleus	46.09	47.46
KRH06635	Soybean	cytosol	46.09	47.46
CDX79781	Canola	extracellular	30.45	46.25
HORVU5Hr1G109020.1	Barley	extracellular	7.82	25.68

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:100305682	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	EMBL:ACUP02004144	ncoils:Coil
EnsemblPlantsGene:GLYMA_07G020000	GO:GO:0000463	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:I1KGP0
InterPro:IPR023106	InterPro:IPR036919	EnsemblPlants:KRH47287	ProteinID:KRH47287	ProteinID:KRH47287.1	InterPro:L30_ferredoxin-like_sf
PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS
InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129
TIGRFAMs:TIGR01310	UniParc:UPI00023C720E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:1568510..1570645

Molecular Weight (calculated)

28411.0 Da

IEP (calculated)

10.611

GRAVY (calculated)

-0.637

Length

243 amino acids

Sequence
(BLAST)

001: MGEEVKVVVP ESVLKKRKRE EEWALAKKQE LDAAKKKRAE SRKLIYNRAK QYAKEYDHQE KELIRLKREA KLKGGFYVDP EAKLLFIIRI RGINAMDPKS
101: RKILQLLRLR QIFNGVFLKV NKATVNMLHR VEPYVTYGYP NLKSVRELIY KRGYGKLMKQ RTALTDNSII EQALGKYGII STEDLIHEII TVGPHFKEAN
201: NFLWPFKLKA PLGGLKKKRN HYVEGGDAGN RENYINELIR RMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.