CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	EES09373	AT4G09570.1	19130088
AT2G01250.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75637	Sorghum	cytosol	22.04	100.0
KXG24783	Sorghum	cytosol	100.0	100.0
Zm00001d024373_P001	Maize	cytosol	97.55	96.76
CDX95588	Canola	cytosol	20.41	92.59
Os04t0605900-01	Rice	plastid	90.61	90.98
KXG27062	Sorghum	cytosol	86.53	90.6
TraesCS5D01G462800.1	Wheat	cytosol, golgi	87.76	88.11
TraesCS5B01G461300.1	Wheat	cytosol	87.76	88.11
TraesCS5A01G452400.1	Wheat	nucleus	87.76	88.11
HORVU5Hr1G108990.2	Barley	cytosol	87.76	87.04
HORVU2Hr1G078780.1	Barley	cytosol	17.96	86.27
TraesCS2A01G432600.1	Wheat	cytosol, unclear	85.31	85.66
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	84.9	85.25
TraesCS2D01G430500.1	Wheat	golgi	84.9	85.25
GSMUA_Achr4P05780_001	Banana	cytosol	84.49	84.84
GSMUA_Achr11P...	Banana	cytosol	84.08	84.43
GSMUA_Achr10P...	Banana	cytosol	84.08	84.43
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	30.2	83.15
KRH44630	Soybean	cytosol	79.59	80.25
KRH47287	Soybean	nucleus	78.78	79.42
Bra004806.1-P	Field mustard	cytosol	77.14	78.1
KRH37351	Soybean	endoplasmic reticulum	77.14	78.1
CDY17884	Canola	cytosol, extracellular	77.14	78.1
PGSC0003DMT400075548	Potato	cytosol	76.33	77.92
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	30.61	77.32
Bra037665.1-P	Field mustard	cytosol	76.33	77.27
PGSC0003DMT400051218	Potato	cytosol	76.33	77.27
AT2G01250.1	Thale cress	cytosol	76.33	77.27
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	76.33	77.27
AT3G13580.3	Thale cress	cytosol	76.73	77.05
CDX77810	Canola	cytosol, extracellular	75.92	76.86
Bra017461.1-P	Field mustard	cytosol	75.92	76.86
Bra014334.1-P	Field mustard	cytosol	75.92	76.86
CDY40393	Canola	cytosol	75.92	76.86
CDY17686	Canola	cytosol	75.92	76.86
CDX83440	Canola	cytosol, extracellular	75.92	76.54
CDY41074	Canola	cytosol	75.51	76.45
CDY37358	Canola	cytosol	75.51	76.45
Bra024895.1-P	Field mustard	cytosol	75.51	76.45
CDY25941	Canola	cytosol	75.51	76.45
PGSC0003DMT400053653	Potato	cytosol	76.33	76.33
Bra000341.1-P	Field mustard	cytosol	60.82	76.02
AT2G44120.2	Thale cress	cytosol	75.1	74.49
OQU80131	Sorghum	cytosol	100.0	73.8
CDY30456	Canola	cytosol	77.14	73.54
HORVU2Hr1G100970.4	Barley	mitochondrion	84.08	70.55
KRH12348	Soybean	endoplasmic reticulum, nucleus	77.96	70.22
GSMUA_Achr4P12660_001	Banana	cytosol	82.45	69.66
KXG27000	Sorghum	plastid	78.78	68.93
KRH25929	Soybean	cytosol	22.86	64.37
CDY23419	Canola	extracellular	76.33	62.33
CDY01953	Canola	cytosol	32.24	55.24
EES15262	Sorghum	cytosol	42.04	39.31
CDX79781	Canola	extracellular	24.9	38.12

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:A0A109ND69	ncoils:Coil	GO:GO:0000463
GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023106	InterPro:IPR036919	ProteinID:KXG18721.1
ProteinID:KXG24782.1	ProteinID:KXG24783.1	InterPro:L30_ferredoxin-like_sf	EnsemblPlants:OQU75620	ProteinID:OQU75620	ProteinID:OQU75620.1
ProteinID:OQU80130.1	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16
InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
EnsemblPlantsGene:SORBI_3K033000	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0001FCD532	SEG:seg	:

Description

hypothetical protein

Coordinates

chrsuper_541:-:124..2100

Molecular Weight (calculated)

28383.9 Da

IEP (calculated)

10.766

GRAVY (calculated)

-0.582

Length

245 amino acids

Sequence
(BLAST)

001: MSAAEAKAAV VPESVLRKRK REEQWAADKK EKALADRKKA LESRKIIFSR AKQYAQEYDA QEKELVQLKR EARLKGGFYV SPEAKLLFVV RIRGINAMHP
101: KTRKILQLLR LRQIFNGVFL KVNKATINML RRVEPYVAYG YPNLKSVREL IYKRGYGKLN KQRIPLSNNN VIEEGLGKHN IICIEDLVHE IMTVGPHFKE
201: ANNFLWPFKL KAPLGGLKKK RNHYVEGGDA GNRENYINEL IKRMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.