CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	KRG91803	AT4G09570.1	19130088
AT2G01250.1	KRH34983	AT4G09570.1	19130088
AT2G01250.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47287	Soybean	nucleus	97.53	97.53
OQU75637	Sorghum	cytosol	21.4	96.3
CDX95588	Canola	cytosol	20.58	92.59
KRH37351	Soybean	endoplasmic reticulum	86.83	87.19
CDY40393	Canola	cytosol	86.01	86.36
Bra014334.1-P	Field mustard	cytosol	86.01	86.36
CDY17686	Canola	cytosol	86.01	86.36
Bra024895.1-P	Field mustard	cytosol	86.01	86.36
CDX77810	Canola	cytosol, extracellular	86.01	86.36
CDY37358	Canola	cytosol	85.6	85.95
CDY25941	Canola	cytosol	85.6	85.95
AT2G01250.1	Thale cress	cytosol	85.6	85.95
Bra017461.1-P	Field mustard	cytosol	85.6	85.95
CDY41074	Canola	cytosol	85.19	85.54
AT3G13580.3	Thale cress	cytosol	84.77	84.43
CDY17884	Canola	cytosol, extracellular	83.13	83.47
Bra004806.1-P	Field mustard	cytosol	83.13	83.47
Bra037665.1-P	Field mustard	cytosol	82.72	83.06
Bra000341.1-P	Field mustard	cytosol	66.67	82.65
AT2G44120.2	Thale cress	cytosol	83.95	82.59
CDX83440	Canola	cytosol, extracellular	81.89	81.89
Os08t0234000-01	Rice	nucleus	80.66	80.0
Os04t0605900-01	Rice	plastid	80.25	79.92
OQU75620	Sorghum	cytosol	80.25	79.59
KXG24783	Sorghum	cytosol	80.25	79.59
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	79.84	79.18
Zm00001d002395_P002	Maize	cytosol, extracellular	79.42	79.1
CDY30456	Canola	cytosol	83.54	78.99
KRH12348	Soybean	endoplasmic reticulum, nucleus	88.07	78.68
Zm00001d026254_P001	Maize	plastid	79.42	78.46
KXG27062	Sorghum	cytosol	75.31	78.21
TraesCS5D01G462800.1	Wheat	cytosol, golgi	78.19	77.87
TraesCS5B01G461300.1	Wheat	cytosol	78.19	77.87
TraesCS5A01G452400.1	Wheat	nucleus	78.19	77.87
Zm00001d024373_P001	Maize	cytosol	79.01	77.73
TraesCS2A01G432600.1	Wheat	cytosol, unclear	77.78	77.46
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	77.37	77.05
KRH25929	Soybean	cytosol	27.57	77.01
HORVU2Hr1G078780.1	Barley	cytosol	16.05	76.47
HORVU5Hr1G108990.2	Barley	cytosol	77.37	76.11
TraesCS2D01G430500.1	Wheat	golgi	76.13	75.82
Zm00001d030114_P001	Maize	cytosol	77.37	74.6
HORVU7Hr1G057320.1	Barley	cytosol	13.58	71.74
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	25.51	69.66
CDY23419	Canola	extracellular	82.3	66.67
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	26.34	65.98
HORVU2Hr1G100970.4	Barley	mitochondrion	76.54	63.7
CDY01953	Canola	cytosol	37.45	63.64
Zm00001d041838_P003	Maize	mitochondrion	32.51	63.2
KXG27000	Sorghum	plastid	68.72	59.64
OQU80131	Sorghum	cytosol	80.25	58.73
KRH06635	Soybean	cytosol	45.27	46.61
KRG94901	Soybean	nucleus	45.27	46.61
CDX79781	Canola	extracellular	29.22	44.38
HORVU5Hr1G109020.1	Barley	extracellular	7.82	25.68

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:100813342	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	EMBL:ACUP02004945	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G222100	GO:GO:0000463	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:I1KVR2
InterPro:IPR023106	InterPro:IPR036919	ProteinID:KRH44629.1	EnsemblPlants:KRH44630	ProteinID:KRH44630	ProteinID:KRH44630.1
InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16
InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0002339108	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:18025948..18028107

Molecular Weight (calculated)

28323.7 Da

IEP (calculated)

10.569

GRAVY (calculated)

-0.667

Length

243 amino acids

Sequence
(BLAST)

001: MGEEVKAVVP ESVLKKQKRE EEWALAKKQD LEAAKKKRAE SRKLIYNRAK QYAKEYDHQE KELIRLKREA KLKGGFYVDP EAKLLFIVRI RGINAMDPKS
101: RKILQLLRLR QIFNGVFLKV NKATVNMLHR VEPYVTYGYP NLKSVRELIY KRGYGKLNKQ RTALTDNSII EQALGKYGII STEDLIHEII TVGPHFKEAN
201: NFLWPFKLKA PLGGLKKKRN HYVEGGDAGN RENYINELIR RMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.