CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004806.1-P	Field mustard	cytosol	100.0	100.0
CDX95588	Canola	cytosol	22.31	100.0
CDX83440	Canola	cytosol, extracellular	94.63	94.24
OQU75637	Sorghum	cytosol	20.66	92.59
AT2G44120.2	Thale cress	cytosol	93.8	91.9
CDY30456	Canola	cytosol	97.11	91.44
CDX77810	Canola	cytosol, extracellular	91.32	91.32
CDY40393	Canola	cytosol	91.32	91.32
CDY17686	Canola	cytosol	91.32	91.32
CDY37358	Canola	cytosol	90.91	90.91
CDY25941	Canola	cytosol	90.5	90.5
CDY41074	Canola	cytosol	89.67	89.67
PGSC0003DMT400051218	Potato	cytosol	85.12	85.12
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	85.12	85.12
VIT_09s0054g00140.t01	Wine grape	cytosol	64.88	84.41
VIT_00s2761g00010.t01	Wine grape	cytosol	17.77	84.31
KRH47287	Soybean	nucleus	84.3	83.95
KRH37351	Soybean	endoplasmic reticulum	83.88	83.88
PGSC0003DMT400075548	Potato	cytosol	82.64	83.33
KRH44630	Soybean	cytosol	83.47	83.13
VIT_09s0054g00010.t01	Wine grape	cytosol	82.64	81.3
VIT_11s0052g00290.t01	Wine grape	cytosol	82.23	81.22
PGSC0003DMT400053653	Potato	cytosol	81.82	80.82
VIT_00s1526g00010.t01	Wine grape	cytosol	17.77	79.63
TraesCS5B01G461300.1	Wheat	cytosol	78.51	77.87
TraesCS5A01G452400.1	Wheat	nucleus	78.51	77.87
Zm00001d002395_P002	Maize	cytosol, extracellular	78.51	77.87
Os04t0605900-01	Rice	plastid	78.51	77.87
TraesCS5D01G462800.1	Wheat	cytosol, golgi	78.1	77.46
Zm00001d026254_P001	Maize	plastid	78.51	77.24
VIT_09s0054g00210.t01	Wine grape	cytosol	47.52	77.18
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	78.1	77.14
OQU75620	Sorghum	cytosol	78.1	77.14
KXG24783	Sorghum	cytosol	78.1	77.14
TraesCS2A01G432600.1	Wheat	cytosol, unclear	77.69	77.05
CDY23419	Canola	extracellular	95.45	77.0
HORVU5Hr1G108990.2	Barley	cytosol	78.51	76.92
Os08t0234000-01	Rice	nucleus	77.69	76.73
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	77.27	76.64
HORVU2Hr1G078780.1	Barley	cytosol	16.12	76.47
VIT_09s0054g00060.t01	Wine grape	cytosol	38.84	76.42
TraesCS2D01G430500.1	Wheat	golgi	76.86	76.23
HORVU7Hr1G057320.1	Barley	cytosol	14.46	76.09
KXG27062	Sorghum	cytosol	73.55	76.07
Zm00001d024373_P001	Maize	cytosol	76.86	75.3
VIT_09s0054g00090.t01	Wine grape	cytosol	41.74	74.81
KRH12348	Soybean	endoplasmic reticulum, nucleus	83.88	74.63
VIT_09s0054g00030.t01	Wine grape	cytosol	46.28	73.68
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	26.86	73.03
Zm00001d030114_P001	Maize	cytosol	75.62	72.62
CDY01953	Canola	cytosol	41.74	70.63
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	27.27	68.04
Zm00001d041838_P003	Maize	mitochondrion	33.88	65.6
KRH25929	Soybean	cytosol	23.14	64.37
HORVU2Hr1G100970.4	Barley	mitochondrion	77.27	64.04
VIT_00s2416g00010.t01	Wine grape	cytosol	19.42	61.04
KXG27000	Sorghum	plastid	66.94	57.86
OQU80131	Sorghum	cytosol	78.1	56.93
CDX79781	Canola	extracellular	37.6	56.88
VIT_09s0054g00190.t01	Wine grape	cytosol	29.75	54.55
CDX79356	Canola	cytosol	40.91	38.52
CDY66947	Canola	cytosol	40.91	37.64
CDY53223	Canola	cytosol	40.91	37.64
CDX67965	Canola	cytosol	40.5	37.12
CDX67964	Canola	cytosol	22.73	30.73
GSMUA_AchrUn_...	Banana	cytosol	9.5	29.11
HORVU5Hr1G109020.1	Barley	extracellular	8.26	27.03

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	GO:A0A078FXI3	UniProt:A0A078FXI3	EnsemblPlants:CDY17884
ProteinID:CDY17884	ProteinID:CDY17884.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00002227001	InterPro:IPR023106	InterPro:IPR036919
InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16
InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0002547C51	SEG:seg	:	:

Description

BnaC04g03350DBnaC04g03350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXI3]

Coordinates

chrLK032079:+:312345..313973

Molecular Weight (calculated)

28025.6 Da

IEP (calculated)

10.616

GRAVY (calculated)

-0.485

Length

242 amino acids

Sequence
(BLAST)

001: MAESKVVVPE SVLKKIKREE EWALAKKQEA AAAKKKSVEN RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATINMLRRV EPYVTYGYPN LKSVKELIYK RGFGKLNHQR IALTDNSIVN EALGKHNIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN

Best Arabidopsis Sequence Match ( AT2G44120.1 )
(BLAST)

001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN

Arabidopsis Description

Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.