Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | HORVU4Hr1G019530.1 | AT4G09570.1 | 19130088 |
| AT2G01250.1 | HORVU5Hr1G032550.3 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G432600.1 | Wheat | cytosol, unclear | 80.48 | 96.31 |
| TraesCS2B01G453900.1 | Wheat | cytosol, golgi, unclear | 80.14 | 95.9 |
| TraesCS2D01G430500.1 | Wheat | golgi | 78.77 | 94.26 |
| CDX95588 | Canola | cytosol | 17.12 | 92.59 |
| HORVU2Hr1G078780.1 | Barley | cytosol | 16.1 | 92.16 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 76.37 | 90.28 |
| Os04t0605900-01 | Rice | plastid | 73.63 | 88.11 |
| HORVU7Hr1G120140.1 | Barley | extracellular, peroxisome | 26.37 | 86.52 |
| Zm00001d026254_P001 | Maize | plastid | 72.6 | 86.18 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 71.92 | 86.07 |
| Zm00001d050193_P001 | Maize | cytosol, plasma membrane, plastid | 70.89 | 84.49 |
| KXG27062 | Sorghum | cytosol | 67.47 | 84.19 |
| KXG24783 | Sorghum | cytosol | 70.55 | 84.08 |
| OQU75620 | Sorghum | cytosol | 70.55 | 84.08 |
| Zm00001d024373_P001 | Maize | cytosol | 70.21 | 83.0 |
| GSMUA_Achr11P... | Banana | cytosol | 68.84 | 82.38 |
| GSMUA_Achr4P05780_001 | Banana | cytosol | 67.81 | 81.15 |
| GSMUA_Achr10P... | Banana | cytosol | 67.47 | 80.74 |
| Zm00001d030114_P001 | Maize | cytosol | 69.52 | 80.56 |
| HORVU7Hr1G057320.1 | Barley | cytosol | 12.67 | 80.43 |
| HORVU6Hr1G079960.1 | Barley | cytosol, extracellular | 26.71 | 80.41 |
| VIT_09s0054g00150.t01 | Wine grape | cytosol | 23.63 | 78.41 |
| PGSC0003DMT400075548 | Potato | cytosol | 64.38 | 78.33 |
| CDY17884 | Canola | cytosol, extracellular | 64.04 | 77.27 |
| Bra004806.1-P | Field mustard | cytosol | 64.04 | 77.27 |
| AT2G01250.1 | Thale cress | cytosol | 63.7 | 76.86 |
| KRH47287 | Soybean | nucleus | 63.7 | 76.54 |
| KRH44630 | Soybean | cytosol | 63.7 | 76.54 |
| PGSC0003DMT400051218 | Potato | cytosol | 63.36 | 76.45 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 63.36 | 76.45 |
| Bra017461.1-P | Field mustard | cytosol | 63.01 | 76.03 |
| PGSC0003DMT400053653 | Potato | cytosol | 63.7 | 75.92 |
| Bra037665.1-P | Field mustard | cytosol | 62.67 | 75.62 |
| CDY41074 | Canola | cytosol | 62.67 | 75.62 |
| CDX77810 | Canola | cytosol, extracellular | 62.67 | 75.62 |
| Bra014334.1-P | Field mustard | cytosol | 62.67 | 75.62 |
| CDY17686 | Canola | cytosol | 62.67 | 75.62 |
| CDY25941 | Canola | cytosol | 62.67 | 75.62 |
| CDY37358 | Canola | cytosol | 62.67 | 75.62 |
| CDY40393 | Canola | cytosol | 62.67 | 75.62 |
| CDX83440 | Canola | cytosol, extracellular | 62.67 | 75.31 |
| Bra024895.1-P | Field mustard | cytosol | 62.33 | 75.21 |
| AT3G13580.3 | Thale cress | cytosol | 62.67 | 75.0 |
| KRH37351 | Soybean | endoplasmic reticulum | 61.99 | 74.79 |
| Bra000341.1-P | Field mustard | cytosol | 49.66 | 73.98 |
| AT2G44120.2 | Thale cress | cytosol | 62.33 | 73.68 |
| CDY30456 | Canola | cytosol | 63.7 | 72.37 |
| GSMUA_Achr4P12660_001 | Banana | cytosol | 69.86 | 70.34 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 61.99 | 66.54 |
| KXG27000 | Sorghum | plastid | 61.99 | 64.64 |
| OQU80131 | Sorghum | cytosol | 72.6 | 63.86 |
| CDY23419 | Canola | extracellular | 65.41 | 63.67 |
| KRH25929 | Soybean | cytosol | 18.84 | 63.22 |
| VIT_09s0054g00070.t01 | Wine grape | extracellular | 22.6 | 53.23 |
| CDY01953 | Canola | cytosol | 26.03 | 53.15 |
| CDX79781 | Canola | extracellular | 21.23 | 38.75 |
| HORVU5Hr1G109020.1 | Barley | extracellular | 6.51 | 25.68 |
Protein Annotations
| Gene3D:1.10.15.30 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | UniProt:A0A287J6L1 | ncoils:Coil | EnsemblPlantsGene:HORVU2Hr1G100970 |
| EnsemblPlants:HORVU2Hr1G100970.4 | InterPro:IPR023106 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | PFAM:PF00327 | PFAM:PF08079 |
| ScanProsite:PS00634 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 | InterPro:Ribosomal_L30_CS | InterPro:Ribosomal_L30_N | InterPro:Ribosomal_L30_central_dom_arc |
| InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk | InterPro:Ribosomal_L7_euk_arc | SUPFAM:SSF55129 | TIGRFAMs:TIGR01310 | UniParc:UPI000B463687 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:692436366..692438591
Molecular Weight (calculated)
33584.3 Da
IEP (calculated)
10.908
GRAVY (calculated)
-0.602
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: RLSRYPRRLS PTKRSSSVEV STGRPNPPPS PPRLNLSLMV LLLISSAQMA TEAAKVPVPE SVKMKRKREE VWATEKRQKV ADEKKKDAEN TKVIYARAQQ
101: YAGEYEAQDK ELVQLKREAR MKGGFYVSPE AKLLFVVRIR GINAMHPKTK KILQLLRLRQ IFNGVFLKVN KATINMLRRV EPYVAYGYPN LKSVRELIYK
201: RGYGKLNKQR IPLTNNKVID EGLGKHNIIC IEDLVHEILT VGPHFKEANN FLWPFKLKAP LGGLKKKRNH YVEGGDAGNR ENYINQLVRR MN
101: YAGEYEAQDK ELVQLKREAR MKGGFYVSPE AKLLFVVRIR GINAMHPKTK KILQLLRLRQ IFNGVFLKVN KATINMLRRV EPYVAYGYPN LKSVRELIYK
201: RGYGKLNKQR IPLTNNKVID EGLGKHNIIC IEDLVHEILT VGPHFKEANN FLWPFKLKAP LGGLKKKRNH YVEGGDAGNR ENYINQLVRR MN
001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
Arabidopsis Description
RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.