Factsheet for PGSC0003DMT400053653

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT2G01250.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95588	Canola	cytosol	21.22	96.3
OQU75637	Sorghum	cytosol	20.41	92.59
PGSC0003DMT400075548	Potato	cytosol	89.8	91.67
PGSC0003DMT400051218	Potato	cytosol	89.39	90.5
VIT_11s0052g00290.t01	Wine grape	cytosol	84.9	84.9
VIT_09s0054g00140.t01	Wine grape	cytosol	64.08	84.41
KRH37351	Soybean	endoplasmic reticulum	82.04	83.06
VIT_09s0054g00010.t01	Wine grape	cytosol	83.27	82.93
Bra024895.1-P	Field mustard	cytosol	81.63	82.64
CDY25941	Canola	cytosol	81.22	82.23
CDY37358	Canola	cytosol	81.22	82.23
CDY40393	Canola	cytosol	81.22	82.23
CDY17686	Canola	cytosol	81.22	82.23
AT2G01250.1	Thale cress	cytosol	81.22	82.23
CDX77810	Canola	cytosol, extracellular	81.22	82.23
Bra017461.1-P	Field mustard	cytosol	81.22	82.23
Bra014334.1-P	Field mustard	cytosol	81.22	82.23
AT2G44120.2	Thale cress	cytosol	82.86	82.19
CDY17884	Canola	cytosol, extracellular	80.82	81.82
CDY41074	Canola	cytosol	80.82	81.82
Bra004806.1-P	Field mustard	cytosol	80.82	81.82
AT3G13580.3	Thale cress	cytosol	80.82	81.15
Bra000341.1-P	Field mustard	cytosol	64.9	81.12
Bra037665.1-P	Field mustard	cytosol	80.0	80.99
CDX83440	Canola	cytosol, extracellular	80.0	80.66
VIT_00s2761g00010.t01	Wine grape	cytosol	16.73	80.39
Zm00001d002395_P002	Maize	cytosol, extracellular	78.37	78.69
VIT_09s0054g00210.t01	Wine grape	cytosol	47.76	78.52
HORVU2Hr1G078780.1	Barley	cytosol	16.33	78.43
Os04t0605900-01	Rice	plastid	77.96	78.28
VIT_00s1526g00010.t01	Wine grape	cytosol	17.14	77.78
Os08t0234000-01	Rice	nucleus	77.55	77.55
TraesCS5D01G462800.1	Wheat	cytosol, golgi	77.14	77.46
TraesCS2A01G432600.1	Wheat	cytosol, unclear	77.14	77.46
TraesCS5A01G452400.1	Wheat	nucleus	77.14	77.46
TraesCS5B01G461300.1	Wheat	cytosol	77.14	77.46
VIT_09s0054g00060.t01	Wine grape	cytosol	38.78	77.24
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	76.73	77.05
CDY30456	Canola	cytosol	80.82	77.04
Zm00001d026254_P001	Maize	plastid	77.14	76.83
KXG27062	Sorghum	cytosol	73.06	76.5
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	76.33	76.33
OQU75620	Sorghum	cytosol	76.33	76.33
KXG24783	Sorghum	cytosol	76.33	76.33
HORVU5Hr1G108990.2	Barley	cytosol	76.33	75.71
VIT_09s0054g00090.t01	Wine grape	cytosol	41.63	75.56
KRH12348	Soybean	endoplasmic reticulum, nucleus	83.67	75.37
Zm00001d024373_P001	Maize	cytosol	75.92	75.3
TraesCS2D01G430500.1	Wheat	golgi	74.69	75.0
VIT_09s0054g00030.t01	Wine grape	cytosol	46.12	74.34
HORVU7Hr1G057320.1	Barley	cytosol	13.88	73.91
Zm00001d030114_P001	Maize	cytosol	75.1	73.02
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	26.12	71.91
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	26.94	68.04
CDY23419	Canola	extracellular	80.41	65.67
Zm00001d041838_P003	Maize	mitochondrion	32.65	64.0
HORVU2Hr1G100970.4	Barley	mitochondrion	75.92	63.7
VIT_00s2416g00010.t01	Wine grape	cytosol	19.18	61.04
CDY01953	Canola	cytosol	35.1	60.14
KXG27000	Sorghum	plastid	67.76	59.29
OQU80131	Sorghum	cytosol	76.33	56.33
VIT_09s0054g00190.t01	Wine grape	cytosol	29.8	55.3
PGSC0003DMT400073431	Potato	cytosol	47.35	47.15
PGSC0003DMT400036807	Potato	cytosol	44.9	44.72
CDX79781	Canola	extracellular	28.16	43.12
GSMUA_AchrUn_...	Banana	cytosol	10.61	32.91
HORVU5Hr1G109020.1	Barley	extracellular	7.76	25.68

Protein Annotations

Gene3D:1.10.15.30	EntrezGene:102601657	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ncoils:Coil	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	UniProt:M1BV98	PFAM:PF00327	PFAM:PF08079	EnsemblPlantsGene:PGSC0003DMG400020813
PGSC:PGSC0003DMG400020813	EnsemblPlants:PGSC0003DMT400053653	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	InterPro:Ribosomal_L30_CS
InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129
TIGRFAMs:TIGR01310	UniParc:UPI000296FC59	RefSeq:XP_006359941.1	:	:	:

Description

Thaliana 60S ribosomal protein L7 [Source:PGSC_GENE;Acc:PGSC0003DMG400020813]

Coordinates

chr8:-:46768919..46771953

Molecular Weight (calculated)

28370.0 Da

IEP (calculated)

10.610

GRAVY (calculated)

-0.527

Length

245 amino acids

Sequence
(BLAST)

001: MGEVVKGAVP VPESVLKKQK RSEEWALAKT QELVAAKKKS AENRKLIYNR AKQYAKEYDQ QEKELIRLKR EARLKGGFYV DPEAKLLFIT RIRGINAMPP
101: QTKKILQLLR LRQIFNGVFL KVNKATVNML HRVEPYVTYG YPNLKSIREL IYKRGYGKVD KQRIALTDNS VIEQVLGKYG IICMEDLVHE IMTVGPHFKQ
201: ANNFLWPFQL KAPLGGLKKK RNHYVEGGDA GNRENFINEL IRRMN

Best Arabidopsis Sequence Match ( AT2G44120.2 )
(BLAST)

001: MYVGEMAESK VVVPESVLKK IKRQEEWALA KKDEAVAAKK KSVEARKLIF KRAEQYAKEY AEKDNELIRL KREAKLKGGF YVDPEAKLLF IIRIRGINAI
101: DPKTKKILQL LRLRQIFNGV FLKVNKATVN MLRRVEPYVT YGYPNLKSVK ELIYKRGYGK LNHQRIALTD NSIVDQALGK HGIICVEDLI HEIMTVGPHF
201: KEANNFLWPF QLKAPLGGLK KKRNHYVEGG DAGNRENFIN ELVRRMN

Arabidopsis Description

Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.