Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT2G01250.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17686 | Canola | cytosol | 99.59 | 99.59 |
| CDX77810 | Canola | cytosol, extracellular | 99.59 | 99.59 |
| CDY40393 | Canola | cytosol | 99.17 | 99.17 |
| Bra024895.1-P | Field mustard | cytosol | 98.76 | 98.76 |
| CDY25941 | Canola | cytosol | 97.93 | 97.93 |
| CDY41074 | Canola | cytosol | 97.52 | 97.52 |
| CDX95588 | Canola | cytosol | 21.49 | 96.3 |
| AT2G01250.1 | Thale cress | cytosol | 95.87 | 95.87 |
| OQU75637 | Sorghum | cytosol | 20.66 | 92.59 |
| CDY17884 | Canola | cytosol, extracellular | 90.91 | 90.91 |
| CDX83440 | Canola | cytosol, extracellular | 88.02 | 87.65 |
| VIT_09s0054g00140.t01 | Wine grape | cytosol | 66.53 | 86.56 |
| KRH47287 | Soybean | nucleus | 86.36 | 86.01 |
| CDY30456 | Canola | cytosol | 90.91 | 85.6 |
| KRH44630 | Soybean | cytosol | 85.95 | 85.6 |
| VIT_00s2761g00010.t01 | Wine grape | cytosol | 17.77 | 84.31 |
| PGSC0003DMT400051218 | Potato | cytosol | 84.3 | 84.3 |
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 84.3 | 84.3 |
| PGSC0003DMT400075548 | Potato | cytosol | 83.47 | 84.17 |
| VIT_11s0052g00290.t01 | Wine grape | cytosol | 85.12 | 84.08 |
| VIT_09s0054g00010.t01 | Wine grape | cytosol | 85.12 | 83.74 |
| KRH37351 | Soybean | endoplasmic reticulum | 83.47 | 83.47 |
| PGSC0003DMT400053653 | Potato | cytosol | 82.23 | 81.22 |
| VIT_09s0054g00210.t01 | Wine grape | cytosol | 49.17 | 79.87 |
| VIT_00s1526g00010.t01 | Wine grape | cytosol | 17.77 | 79.63 |
| VIT_09s0054g00060.t01 | Wine grape | cytosol | 39.67 | 78.05 |
| VIT_09s0054g00090.t01 | Wine grape | cytosol | 43.39 | 77.78 |
| CDY01953 | Canola | cytosol | 45.87 | 77.62 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 77.27 | 76.64 |
| HORVU2Hr1G078780.1 | Barley | cytosol | 16.12 | 76.47 |
| Zm00001d050193_P001 | Maize | cytosol, plasma membrane, plastid | 77.27 | 76.33 |
| VIT_09s0054g00030.t01 | Wine grape | cytosol | 47.93 | 76.32 |
| Os04t0605900-01 | Rice | plastid | 76.86 | 76.23 |
| HORVU7Hr1G057320.1 | Barley | cytosol | 14.46 | 76.09 |
| Zm00001d026254_P001 | Maize | plastid | 77.27 | 76.02 |
| TraesCS5B01G461300.1 | Wheat | cytosol | 76.45 | 75.82 |
| TraesCS5A01G452400.1 | Wheat | nucleus | 76.45 | 75.82 |
| TraesCS2A01G432600.1 | Wheat | cytosol, unclear | 76.45 | 75.82 |
| KXG24783 | Sorghum | cytosol | 76.45 | 75.51 |
| OQU75620 | Sorghum | cytosol | 76.45 | 75.51 |
| TraesCS5D01G462800.1 | Wheat | cytosol, golgi | 76.03 | 75.41 |
| TraesCS2D01G430500.1 | Wheat | golgi | 76.03 | 75.41 |
| TraesCS2B01G453900.1 | Wheat | cytosol, golgi, unclear | 76.03 | 75.41 |
| Zm00001d024373_P001 | Maize | cytosol | 76.86 | 75.3 |
| Os08t0234000-01 | Rice | nucleus | 76.03 | 75.1 |
| KXG27062 | Sorghum | cytosol | 71.9 | 74.36 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 75.62 | 74.09 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 83.06 | 73.9 |
| HORVU7Hr1G120140.1 | Barley | extracellular, peroxisome | 26.45 | 71.91 |
| Zm00001d030114_P001 | Maize | cytosol | 74.38 | 71.43 |
| CDY23419 | Canola | extracellular | 87.6 | 70.67 |
| HORVU6Hr1G079960.1 | Barley | cytosol, extracellular | 26.86 | 67.01 |
| KRH25929 | Soybean | cytosol | 23.97 | 66.67 |
| HORVU2Hr1G100970.4 | Barley | mitochondrion | 75.62 | 62.67 |
| Zm00001d041838_P003 | Maize | mitochondrion | 32.23 | 62.4 |
| VIT_00s2416g00010.t01 | Wine grape | cytosol | 19.01 | 59.74 |
| KXG27000 | Sorghum | plastid | 66.12 | 57.14 |
| OQU80131 | Sorghum | cytosol | 76.45 | 55.72 |
| VIT_09s0054g00190.t01 | Wine grape | cytosol | 29.75 | 54.55 |
| CDX79781 | Canola | extracellular | 32.64 | 49.38 |
| CDX79356 | Canola | cytosol | 43.39 | 40.86 |
| CDY66947 | Canola | cytosol | 43.39 | 39.92 |
| CDY53223 | Canola | cytosol | 43.39 | 39.92 |
| CDX67965 | Canola | cytosol | 42.98 | 39.39 |
| CDX67964 | Canola | cytosol | 23.14 | 31.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 9.92 | 30.38 |
| HORVU5Hr1G109020.1 | Barley | extracellular | 8.68 | 28.38 |
Protein Annotations
| Gene3D:1.10.15.30 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | GO:A0A078HKG8 | UniProt:A0A078HKG8 | EnsemblPlants:CDY37358 |
| ProteinID:CDY37358 | ProteinID:CDY37358.1 | ncoils:Coil | EnsemblPlantsGene:GSBRNA2T00063908001 | InterPro:IPR023106 | InterPro:IPR036919 |
| InterPro:L30_ferredoxin-like_sf | PFAM:PF00327 | PFAM:PF08079 | ScanProsite:PS00634 | PANTHER:PTHR11524 | PANTHER:PTHR11524:SF16 |
| InterPro:Ribosomal_L30_CS | InterPro:Ribosomal_L30_N | InterPro:Ribosomal_L30_central_dom_arc | InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk | InterPro:Ribosomal_L7_euk_arc |
| SUPFAM:SSF55129 | TIGRFAMs:TIGR01310 | UniParc:UPI0004EDF589 | SEG:seg | : | : |
Description
BnaC02g33760DBnaC02g33760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKG8]
Coordinates
chrLK032398:-:229601..231197
Molecular Weight (calculated)
27904.3 Da
IEP (calculated)
10.627
GRAVY (calculated)
-0.543
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESKVAVPE SVLKKRKREE EWALAKKQSA EAAKKTNAAN RKLIYKRAEQ YAKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR VALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR VALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
001: MVESKVVVPE SVLKKRKREE EWALEKKQNV EAAKKKNAEN RKLIFKRAEQ YSKEYAEKEK ELISLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
101: KILQLLRLRQ IFNGVFLKVN KATMNMLRRV EPYVTYGFPN LKSVKELIYK RGYGKLNHQR IALTDNSIVE QALGKHGIIC TEDLIHEILT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
Arabidopsis Description
RPL7B60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.