CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003583.1-P	Field mustard	cytosol	92.22	89.77
CDX67965	Canola	cytosol	92.22	89.77
CDY53223	Canola	cytosol	88.33	86.31
CDY66947	Canola	cytosol	88.33	86.31
AT1G80750.1	Thale cress	cytosol	80.54	83.81
CDX67964	Canola	cytosol	52.14	74.86
KRH06635	Soybean	cytosol	53.31	58.05
VIT_09s0070g00130.t01	Wine grape	cytosol	55.25	57.72
KRG94901	Soybean	nucleus	52.92	57.63
PGSC0003DMT400036807	Potato	cytosol	52.92	55.28
PGSC0003DMT400073431	Potato	cytosol	52.53	54.88
Solyc06g068400.2.1	Tomato	cytosol, nucleus	52.14	54.47
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	36.19	52.25
TraesCS7A01G266000.1	Wheat	nucleus	45.91	47.58
TraesCS7B01G166400.1	Wheat	cytosol	45.91	47.58
TraesCS7D01G268700.1	Wheat	cytosol	45.53	47.18
Solyc03g117060.2.1	Tomato	nucleus	54.09	46.33
Os08t0542100-01	Rice	nucleus	48.64	45.45
EES15262	Sorghum	cytosol	45.14	44.27
Zm00001d031703_P001	Maize	cytosol, plasma membrane	44.75	43.89
Zm00001d052719_P002	Maize	cytosol	44.75	43.89
CDY40393	Canola	cytosol	40.86	43.39
CDY37358	Canola	cytosol	40.86	43.39
CDY25941	Canola	cytosol	40.86	43.39
CDY17686	Canola	cytosol	40.86	43.39
CDX77810	Canola	cytosol, extracellular	40.86	43.39
CDX95588	Canola	cytosol	8.95	42.59
CDY41074	Canola	cytosol	40.08	42.56
CDY17884	Canola	cytosol, extracellular	38.52	40.91
CDX83440	Canola	cytosol, extracellular	37.74	39.92
CDY30456	Canola	cytosol	38.91	38.91
TraesCS1D01G134300.1	Wheat	cytosol	32.68	34.85
CDY23419	Canola	extracellular	38.13	32.67
CDY01953	Canola	cytosol	16.34	29.37
CDX79781	Canola	extracellular	11.67	18.75

Protein Annotations

EnsemblPlants:CDX79356	EnsemblPlantsGene:GSBRNA2T00132049001	Gene3D:1.10.15.30	Gene3D:3.30.1390.20	InterPro:IPR023106	InterPro:IPR036919
InterPro:L30_ferredoxin-like_sf	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	PFAM:PF00327	PFAM:PF08079	ProteinID:CDX79356	ProteinID:CDX79356.1
SEG:seg	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0004EE2FCB	MapMan:17.1.2.1.5	:

Description

BnaC06g19470D

Coordinates

chrLK031817:-:1589691..1591449

Molecular Weight (calculated)

29287.0 Da

IEP (calculated)

10.431

GRAVY (calculated)

-0.521

Length

257 amino acids

Sequence
(BLAST)

001: MAEEEAKVVA VEEANKGLDY IPEVILKKRK NRDELAFIRK KQLELGNFGK KKKKKVADIK RPEDFVLEFR AKEIDLIRMK QRVKRPRATP QPAKSNLVFI
101: IRIQGKNDMH PKTKKVLNSM QLRSTFTGVF AKATDGLFQK LLKVQPYVTY GYPNGKSVKD LIFKKGYTII EGNPVPLTDN NIIEQALGEH GIFCIEDIVN
201: EIARVGDHFR EVMRFLGPLK LNKPEAGVLH GKKQVFSDGG DTGNREDKIN DLIIKMN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.