Factsheet for Os08t0542100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G266000.1	Wheat	nucleus	73.45	81.45
TraesCS7B01G166400.1	Wheat	cytosol	73.45	81.45
TraesCS7D01G268700.1	Wheat	cytosol	72.36	80.24
EES15262	Sorghum	cytosol	66.18	69.47
Zm00001d031703_P001	Maize	cytosol, plasma membrane	65.45	68.7
Zm00001d052719_P002	Maize	cytosol	63.64	66.79
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	41.82	64.61
TraesCS1D01G134300.1	Wheat	cytosol	49.45	56.43
PGSC0003DMT400073431	Potato	cytosol	49.09	54.88
Solyc06g068400.2.1	Tomato	cytosol, nucleus	48.73	54.47
PGSC0003DMT400036807	Potato	cytosol	46.91	52.44
AT1G80750.1	Thale cress	cytosol	46.55	51.82
VIT_09s0070g00130.t01	Wine grape	cytosol	44.73	50.0
CDX79356	Canola	cytosol	45.45	48.64
CDX67965	Canola	cytosol	45.45	47.35
KRH06635	Soybean	cytosol	40.36	47.03
Bra003583.1-P	Field mustard	cytosol	45.09	46.97
KRG94901	Soybean	nucleus	40.0	46.61
CDY66947	Canola	cytosol	44.36	46.39
CDY53223	Canola	cytosol	44.0	46.01
Bra008443.1-P	Field mustard	cytosol	44.0	46.01
Os08t0234000-01	Rice	nucleus	40.0	44.9
Os04t0605900-01	Rice	plastid	39.64	44.67
Solyc03g117060.2.1	Tomato	nucleus	47.27	43.33
CDX67964	Canola	cytosol	24.73	37.99

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	UniProt:A0A0P0XJU9	ProteinID:BAT06501.1	GO:GO:0000463
GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023106
InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	EnsemblPlantsGene:Os08g0542100	EnsemblPlants:Os08t0542100-01	PFAM:PF00327	PFAM:PF08079
PANTHER:PTHR11524	PANTHER:PTHR11524:SF11	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk
InterPro:Ribosomal_L7_euk_arc	SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI000393B3E2	SEG:seg	:

Description

Similar to 60S ribosomal protein L7. (Os08t0542100-01)

Coordinates

chr8:+:27127762..27129490

Molecular Weight (calculated)

31679.0 Da

IEP (calculated)

10.757

GRAVY (calculated)

-0.600

Length

275 amino acids

Sequence
(BLAST)

001: PRNPSPSRRS AAAAVVQGEA CVEIAATMMA EEGTQQLPYV RETVLKKRKV NEDWAVKNRE RKAAKRQRRR DDGKGAIKRP EDFVREFRNK ELDFVRMKTR
101: LKVRKLPPAE TLNSKLVFAI RIPGTMDLHP HMRRILRKLR LTQVLTGVFL KATDATMKRL LVVEPFITYG FPNLKNVKDL IYKKGRGFLD KEPFPLTSND
201: LIEKALGEYG IICLEDLVHE IASVGPHFRE ASNFLMPFKL KCPERRLQMK KKPFKDGGDS GNREDKINEL IEKLN

Best Arabidopsis Sequence Match ( AT1G80750.1 )
(BLAST)

001: MAEEEAKGLD YIPEIVLKKR KNRDELAFIR KKQLELGNSG KKKKKVSDIK RPEDFVHEFR AKEVDMIRMK QRVKRPKSSP PPVKSDLVFI IRIQGKNDMH
101: PKTKRILNNL QLKSVFTGVF AKATDSLFQK LLKVQPYVTY GYPNDKSVKD LIYKKGCTII EGNPVPLTDN NIIEQALGEH KILGIEDLVN EIARVGDHFR
201: EVMRFLGPLK LNKPVADVLH RKKQVFSEGG DTGNREDKIN DLISKMN

Arabidopsis Description

RPL7A60S ribosomal protein L7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.