Factsheet for Os04t0605900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18557835
nucleus: 19621931
plastid: 21433289
nucleus: 23777608
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	Os11t0171500-01	AT4G09570.1	19130088
AT2G01250.1	Os12t0169800-00	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95588	Canola	cytosol	20.9	94.44
Os08t0234000-01	Rice	nucleus	93.44	93.06
Zm00001d002395_P002	Maize	cytosol, extracellular	92.21	92.21
Zm00001d026254_P001	Maize	plastid	92.62	91.87
TraesCS5B01G461300.1	Wheat	cytosol	91.39	91.39
TraesCS5A01G452400.1	Wheat	nucleus	91.39	91.39
KXG27062	Sorghum	cytosol	87.3	91.03
TraesCS5D01G462800.1	Wheat	cytosol, golgi	90.98	90.98
KXG24783	Sorghum	cytosol	90.98	90.61
OQU75620	Sorghum	cytosol	90.98	90.61
HORVU5Hr1G108990.2	Barley	cytosol	91.39	90.28
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	90.57	90.2
TraesCS2A01G432600.1	Wheat	cytosol, unclear	90.16	90.16
TraesCS2B01G453900.1	Wheat	cytosol, golgi, unclear	89.75	89.75
Zm00001d024373_P001	Maize	cytosol	89.75	88.66
TraesCS2D01G430500.1	Wheat	golgi	88.52	88.52
HORVU2Hr1G078780.1	Barley	cytosol	18.44	88.24
Zm00001d030114_P001	Maize	cytosol	89.34	86.51
GSMUA_Achr11P...	Banana	cytosol	85.66	85.66
GSMUA_Achr10P...	Banana	cytosol	84.43	84.43
GSMUA_Achr4P05780_001	Banana	cytosol	84.02	84.02
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	30.33	83.15
VIT_09s0054g00150.t01	Wine grape	cytosol	29.1	80.68
KRH47287	Soybean	nucleus	79.92	80.25
KRH44630	Soybean	cytosol	79.92	80.25
PGSC0003DMT400075548	Potato	cytosol	77.46	78.75
CDX83440	Canola	cytosol, extracellular	78.28	78.6
CDY17884	Canola	cytosol, extracellular	77.87	78.51
Bra004806.1-P	Field mustard	cytosol	77.87	78.51
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	77.46	78.1
PGSC0003DMT400051218	Potato	cytosol	77.46	78.1
PGSC0003DMT400053653	Potato	cytosol	78.28	77.96
AT2G01250.1	Thale cress	cytosol	77.05	77.69
Bra017461.1-P	Field mustard	cytosol	77.05	77.69
Bra037665.1-P	Field mustard	cytosol	77.05	77.69
Bra000341.1-P	Field mustard	cytosol	62.3	77.55
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	30.74	77.32
Bra014334.1-P	Field mustard	cytosol	76.64	77.27
CDY25941	Canola	cytosol	76.64	77.27
CDY17686	Canola	cytosol	76.64	77.27
CDX77810	Canola	cytosol, extracellular	76.64	77.27
CDY41074	Canola	cytosol	76.64	77.27
CDY40393	Canola	cytosol	76.64	77.27
AT3G13580.3	Thale cress	cytosol	77.05	77.05
KRH37351	Soybean	endoplasmic reticulum	76.23	76.86
CDY37358	Canola	cytosol	76.23	76.86
AT2G44120.2	Thale cress	cytosol	77.46	76.52
Bra024895.1-P	Field mustard	cytosol	75.82	76.45
CDY30456	Canola	cytosol	77.87	73.93
HORVU2Hr1G100970.4	Barley	mitochondrion	88.11	73.63
GSMUA_Achr4P12660_001	Banana	cytosol	84.43	71.03
KRH12348	Soybean	endoplasmic reticulum, nucleus	77.87	69.85
KXG27000	Sorghum	plastid	78.69	68.57
OQU80131	Sorghum	cytosol	90.98	66.87
KRH25929	Soybean	cytosol	22.95	64.37
CDY23419	Canola	extracellular	77.87	63.33
VIT_09s0054g00070.t01	Wine grape	extracellular	28.28	55.65
CDY01953	Canola	cytosol	31.97	54.55
Os08t0542100-01	Rice	nucleus	44.67	39.64
CDX79781	Canola	extracellular	25.0	38.12

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	EntrezGene:4336914	EMBL:AK073472	ProteinID:BAF15711.1
ProteinID:BAS90886.1	ncoils:Coil	ProteinID:EEE61632.1	GO:GO:0000463	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	InterPro:IPR023106	InterPro:IPR036919	InterPro:L30_ferredoxin-like_sf	EnsemblPlantsGene:Os04g0605900	EnsemblPlants:Os04t0605900-01
PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16	UniProt:Q0JAC6
InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGRFAMs:TIGR01310	UniParc:UPI0000DD9263	RefSeq:XP_015637188.1	SEG:seg	:

Description

RIBOSOMAL PROTEIN L7Similar to 60S ribosomal protein L7-2. (Os04t0605900-01)

Coordinates

chr4:+:30599917..30602262

Molecular Weight (calculated)

28363.0 Da

IEP (calculated)

10.673

GRAVY (calculated)

-0.555

Length

244 amino acids

Sequence
(BLAST)

001: MASEAAKVVV PESVLRKRKR EEVWAAASKE KAVAEKKKSI ESRKLIFSRA KQYAEEYEAQ EKELVQLKRE ARMKGGFYVS PEEKLLFVVR IRGINAMHPK
101: TRKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVAYGY PNLKSVRELI YKRGYGKLNK QRIPLTNNKV IEEGLGKHDI ICIEDLVHEI MTVGPHFKEA
201: NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NRENYINELI RRMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.