Factsheet for TraesCS2B01G453900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01250.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT2G01250.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT2G01250.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT2G01250.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G432600.1	Wheat	cytosol, unclear	99.59	99.59
TraesCS2D01G430500.1	Wheat	golgi	94.67	94.67
TraesCS5B01G461300.1	Wheat	cytosol	93.03	93.03
CDX95588	Canola	cytosol	20.49	92.59
HORVU2Hr1G078780.1	Barley	cytosol	19.26	92.16
Os04t0605900-01	Rice	plastid	89.75	89.75
Zm00001d002395_P002	Maize	cytosol, extracellular	86.89	86.89
HORVU7Hr1G120140.1	Barley	extracellular, peroxisome	31.56	86.52
Zm00001d026254_P001	Maize	plastid	86.48	85.77
KXG27062	Sorghum	cytosol	81.97	85.47
Zm00001d050193_P001	Maize	cytosol, plasma membrane, plastid	85.66	85.31
OQU75620	Sorghum	cytosol	85.25	84.9
KXG24783	Sorghum	cytosol	85.25	84.9
Zm00001d024373_P001	Maize	cytosol	85.25	84.21
GSMUA_Achr11P...	Banana	cytosol	81.97	81.97
GSMUA_Achr4P05780_001	Banana	cytosol	81.15	81.15
GSMUA_Achr10P...	Banana	cytosol	80.74	80.74
HORVU6Hr1G079960.1	Barley	cytosol, extracellular	31.97	80.41
Zm00001d030114_P001	Maize	cytosol	82.79	80.16
HORVU2Hr1G100970.4	Barley	mitochondrion	95.9	80.14
PGSC0003DMT400075548	Potato	cytosol	78.69	80.0
KRH47287	Soybean	nucleus	77.05	77.37
KRH44630	Soybean	cytosol	77.05	77.37
VIT_09s0054g00150.t01	Wine grape	cytosol	27.87	77.27
Solyc07g008370.2.1	Tomato	cytosol, nucleus, plastid, unclear	76.64	77.27
PGSC0003DMT400051218	Potato	cytosol	76.64	77.27
Bra004806.1-P	Field mustard	cytosol	76.64	77.27
CDY17884	Canola	cytosol, extracellular	76.64	77.27
PGSC0003DMT400053653	Potato	cytosol	77.05	76.73
AT2G01250.1	Thale cress	cytosol	75.82	76.45
Bra017461.1-P	Field mustard	cytosol	75.82	76.45
CDY37358	Canola	cytosol	75.41	76.03
CDY17686	Canola	cytosol	75.41	76.03
CDY40393	Canola	cytosol	75.41	76.03
CDY41074	Canola	cytosol	75.41	76.03
Bra037665.1-P	Field mustard	cytosol	75.41	76.03
CDX77810	Canola	cytosol, extracellular	75.41	76.03
Bra014334.1-P	Field mustard	cytosol	75.41	76.03
CDY25941	Canola	cytosol	75.41	76.03
Bra024895.1-P	Field mustard	cytosol	75.0	75.62
CDX83440	Canola	cytosol, extracellular	75.0	75.31
KRH37351	Soybean	endoplasmic reticulum	74.59	75.21
AT3G13580.3	Thale cress	cytosol	75.0	75.0
Bra000341.1-P	Field mustard	cytosol	59.43	73.98
AT2G44120.2	Thale cress	cytosol	74.59	73.68
CDY30456	Canola	cytosol	75.82	71.98
GSMUA_Achr4P12660_001	Banana	cytosol	81.56	68.62
KRH12348	Soybean	endoplasmic reticulum, nucleus	75.41	67.65
KRH25929	Soybean	cytosol	22.95	64.37
KXG27000	Sorghum	plastid	72.54	63.21
OQU80131	Sorghum	cytosol	85.25	62.65
CDY23419	Canola	extracellular	75.82	61.67
VIT_09s0054g00070.t01	Wine grape	extracellular	27.05	53.23
CDY01953	Canola	cytosol	31.15	53.15
TraesCS7B01G166400.1	Wheat	cytosol	40.57	39.92
CDX79781	Canola	extracellular	23.36	35.62

Protein Annotations

Gene3D:1.10.15.30	MapMan:17.1.2.1.5	Gene3D:3.30.1390.20	ncoils:Coil	InterPro:IPR023106	InterPro:IPR036919
InterPro:L30_ferredoxin-like_sf	PFAM:PF00327	PFAM:PF08079	ScanProsite:PS00634	PANTHER:PTHR11524	PANTHER:PTHR11524:SF16
InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like	InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc
SUPFAM:SSF55129	TIGRFAMs:TIGR01310	EnsemblPlantsGene:TraesCS2B01G453900	EnsemblPlants:TraesCS2B01G453900.1	TIGR:cd01657	SEG:seg

Description

No Description!

Coordinates

chr2B:-:647741667..647743517

Molecular Weight (calculated)

28103.6 Da

IEP (calculated)

10.690

GRAVY (calculated)

-0.580

Length

244 amino acids

Sequence
(BLAST)

001: MASEAAKVPV PESVNFKRKR GEVWAAAKKQ KVADEKKKDA ENTKVIYARA KEYAGEYEAQ DKELVQLKRE ARMKGGFYVS PEAKLLFVVR IRGINAMHPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVAYGY PNLKSVRELI YKRGYGKLNK QRIPLTNNKV IEEGLGKHNI ICIEDLVHEI LTVGPHFKEA
201: NNFLWPFKLK APLGGLKKKR NHYVEGGDAG NRENYINQLV RRMN

Best Arabidopsis Sequence Match ( AT3G13580.5 )
(BLAST)

001: MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK
101: TKKILQLLRL RQIFNGVFLK VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI ICVEDLIHEI MTVGPHFKEA
201: NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV RRMN

Arabidopsis Description

RPL7DRibosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VHA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.