Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01250.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT2G01250.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g008370.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 100.0 | 100.0 |
| CDX95588 | Canola | cytosol | 21.49 | 96.3 |
| OQU75637 | Sorghum | cytosol | 20.66 | 92.59 |
| PGSC0003DMT400075548 | Potato | cytosol | 89.26 | 90.0 |
| PGSC0003DMT400053653 | Potato | cytosol | 90.5 | 89.39 |
| KRH37351 | Soybean | endoplasmic reticulum | 85.95 | 85.95 |
| AT2G01250.1 | Thale cress | cytosol | 85.12 | 85.12 |
| CDY17884 | Canola | cytosol, extracellular | 85.12 | 85.12 |
| Bra004806.1-P | Field mustard | cytosol | 85.12 | 85.12 |
| CDX77810 | Canola | cytosol, extracellular | 84.71 | 84.71 |
| Bra017461.1-P | Field mustard | cytosol | 84.71 | 84.71 |
| Bra014334.1-P | Field mustard | cytosol | 84.71 | 84.71 |
| CDY17686 | Canola | cytosol | 84.71 | 84.71 |
| CDY25941 | Canola | cytosol | 84.71 | 84.71 |
| CDY40393 | Canola | cytosol | 84.71 | 84.71 |
| Bra024895.1-P | Field mustard | cytosol | 84.3 | 84.3 |
| CDY41074 | Canola | cytosol | 84.3 | 84.3 |
| CDY37358 | Canola | cytosol | 84.3 | 84.3 |
| Bra037665.1-P | Field mustard | cytosol | 83.88 | 83.88 |
| VIT_09s0054g00140.t01 | Wine grape | cytosol | 64.46 | 83.87 |
| AT2G44120.2 | Thale cress | cytosol | 84.3 | 82.59 |
| AT3G13580.3 | Thale cress | cytosol | 83.06 | 82.38 |
| VIT_00s2761g00010.t01 | Wine grape | cytosol | 17.36 | 82.35 |
| Bra000341.1-P | Field mustard | cytosol | 66.53 | 82.14 |
| VIT_11s0052g00290.t01 | Wine grape | cytosol | 83.06 | 82.04 |
| VIT_09s0054g00010.t01 | Wine grape | cytosol | 83.06 | 81.71 |
| CDX83440 | Canola | cytosol, extracellular | 81.82 | 81.48 |
| CDY30456 | Canola | cytosol | 84.71 | 79.77 |
| VIT_00s1526g00010.t01 | Wine grape | cytosol | 17.77 | 79.63 |
| HORVU2Hr1G078780.1 | Barley | cytosol | 16.53 | 78.43 |
| VIT_09s0054g00060.t01 | Wine grape | cytosol | 39.67 | 78.05 |
| Zm00001d002395_P002 | Maize | cytosol, extracellular | 78.51 | 77.87 |
| VIT_09s0054g00210.t01 | Wine grape | cytosol | 47.93 | 77.85 |
| TraesCS5B01G461300.1 | Wheat | cytosol | 78.1 | 77.46 |
| Os04t0605900-01 | Rice | plastid | 78.1 | 77.46 |
| TraesCS5A01G452400.1 | Wheat | nucleus | 78.1 | 77.46 |
| Zm00001d026254_P001 | Maize | plastid | 78.51 | 77.24 |
| TraesCS5D01G462800.1 | Wheat | cytosol, golgi | 77.69 | 77.05 |
| TraesCS2A01G432600.1 | Wheat | cytosol, unclear | 77.69 | 77.05 |
| Os08t0234000-01 | Rice | nucleus | 77.69 | 76.73 |
| TraesCS2B01G453900.1 | Wheat | cytosol, golgi, unclear | 77.27 | 76.64 |
| KXG24783 | Sorghum | cytosol | 77.27 | 76.33 |
| OQU75620 | Sorghum | cytosol | 77.27 | 76.33 |
| Zm00001d050193_P001 | Maize | cytosol, plasma membrane, plastid | 76.86 | 75.92 |
| KRH12348 | Soybean | endoplasmic reticulum, nucleus | 85.12 | 75.74 |
| HORVU5Hr1G108990.2 | Barley | cytosol | 77.27 | 75.71 |
| KXG27062 | Sorghum | cytosol | 73.14 | 75.64 |
| TraesCS2D01G430500.1 | Wheat | golgi | 75.62 | 75.0 |
| Zm00001d024373_P001 | Maize | cytosol | 76.03 | 74.49 |
| VIT_09s0054g00030.t01 | Wine grape | cytosol | 46.69 | 74.34 |
| VIT_09s0054g00090.t01 | Wine grape | cytosol | 41.32 | 74.07 |
| HORVU7Hr1G057320.1 | Barley | cytosol | 14.05 | 73.91 |
| Zm00001d030114_P001 | Maize | cytosol | 75.21 | 72.22 |
| HORVU7Hr1G120140.1 | Barley | extracellular, peroxisome | 26.45 | 71.91 |
| HORVU6Hr1G079960.1 | Barley | cytosol, extracellular | 27.27 | 68.04 |
| CDY23419 | Canola | extracellular | 82.64 | 66.67 |
| VIT_00s2416g00010.t01 | Wine grape | cytosol | 20.25 | 63.64 |
| HORVU2Hr1G100970.4 | Barley | mitochondrion | 76.45 | 63.36 |
| Zm00001d041838_P003 | Maize | mitochondrion | 32.64 | 63.2 |
| CDY01953 | Canola | cytosol | 37.19 | 62.94 |
| KXG27000 | Sorghum | plastid | 67.36 | 58.21 |
| VIT_09s0054g00190.t01 | Wine grape | cytosol | 30.99 | 56.82 |
| OQU80131 | Sorghum | cytosol | 77.27 | 56.33 |
| PGSC0003DMT400073431 | Potato | cytosol | 49.17 | 48.37 |
| CDX79781 | Canola | extracellular | 30.99 | 46.88 |
| PGSC0003DMT400036807 | Potato | cytosol | 47.52 | 46.75 |
| GSMUA_AchrUn_... | Banana | cytosol | 11.16 | 34.18 |
| HORVU5Hr1G109020.1 | Barley | extracellular | 8.26 | 27.03 |
Protein Annotations
| Gene3D:1.10.15.30 | EntrezGene:102594660 | MapMan:17.1.2.1.5 | Gene3D:3.30.1390.20 | ProteinID:ABB16984 | ProteinID:ABB16984.1 |
| ncoils:Coil | EMBL:DQ228335 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | InterPro:IPR023106 | InterPro:IPR036919 | InterPro:L30_ferredoxin-like_sf | UniProt:M1BRF8 | PFAM:PF00327 |
| PFAM:PF08079 | EnsemblPlantsGene:PGSC0003DMG402019891 | PGSC:PGSC0003DMG402019891 | EnsemblPlants:PGSC0003DMT400051218 | ScanProsite:PS00634 | PANTHER:PTHR11524 |
| PANTHER:PTHR11524:SF16 | InterPro:Ribosomal_L30_CS | InterPro:Ribosomal_L30_N | InterPro:Ribosomal_L30_central_dom_arc | InterPro:Ribosomal_L30_ferredoxin-like | InterPro:Ribosomal_L7_euk |
| InterPro:Ribosomal_L7_euk_arc | SUPFAM:SSF55129 | TIGRFAMs:TIGR01310 | UniParc:UPI0000601606 | RefSeq:XP_006366954.1 | : |
Description
Thaliana 60S ribosomal protein L7 [Source:PGSC_GENE;Acc:PGSC0003DMG402019891]
Coordinates
chr7:+:4879834..4882480
Molecular Weight (calculated)
28007.6 Da
IEP (calculated)
10.581
GRAVY (calculated)
-0.483
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGGVVVPE SVLKKQKRNE EWALVKKQEL AVAKKKSVEN RKLIYNRAKQ YAKEYSEQEK ELIRLKREAR LKGGFYVDPE AKLLFIIRIR GINAMPPQTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLHRV EPYVTYGYPN LKSIKELIYK RGYGKVDKQR IALTDNAVVE QVLGKHGIIC IEDLVHEIIT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
101: KILQLLRLRQ IFNGVFLKVN KATVNMLHRV EPYVTYGYPN LKSIKELIYK RGYGKVDKQR IALTDNAVVE QVLGKHGIIC IEDLVHEIIT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN
Arabidopsis Description
Ribosomal protein L30/L7 family protein [Source:UniProtKB/TrEMBL;Acc:F4IT48]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.